Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54130 568 / 0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) AT1G02270 568 / 0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) AT3G18500 65 / 5e-11 DNAse I-like superfamily protein (.1.2.3) AT1G73875 61 / 7e-10 DNAse I-like superfamily protein (.1) AT5G11350 54 / 2e-07 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005145 [exp] 754 / 0 AT1G02270 572 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) Lus10030173 [exp] 742 / 0 AT1G02270 568 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) Lus10036357 [exp] 61 / 9e-10 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10014775 [exp] 59 / 3e-09 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10013119 [exp] 59 / 8e-09 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10008086 [exp] 57 / 2e-08 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10032490 [exp] 54 / 1e-07 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G108200 [exp] 650 / 0 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 617 / 0 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G007600 [exp] 573 / 0 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 568 / 0 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G057100 [exp] 49 / 4e-06 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.018G032300 [exp] 48 / 1e-05 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10010095 pacid=23158882 polypeptide=Lus10010095 locus=Lus10010095.g ID=Lus10010095.BGIv1.0 annot-version=v1.0 ATGGCCATTGGTTTGTGGCAACAGGTGGCTGTGCTCGACTCCGTTGCTGCTAATTCCGGCGGTGCAATTCCCAGACCTCCGCCTTCTGCCTCTGCCAAGA CATCGGCTACGGCGACCGCTTCTCCTCCTCCGTCAATGGCAGATGACTTGAGCCATATTTCTTGCACTACTTTCAACATCTTAGCTCCCATCTACAAGCG CCTCGACCATCAGAACCAAAGCCTCCGTGAAAGCGATTTCAAATCCTACTGGCTCTCTCGGAACCAGATGATTTTGGAATGGTTGCTCATGGAAAGAACC TCAATCATTTGCCTCCAGGAATTCTGGACTGGAAATGAAGAGCTTGTGCATATGTATGAGGACAAGCTCTGTGACGCTGGTTATTTCACTTTCCAACTTG CCAGGACAAACAACCGAGGAGATGGCTTGCTAATGGCTGTACATAAGGACTACTTTAGGATAATTAATTATAAGGAGTTGCTCTTTAATGACTTTGGAGA CCGCGTCGCACAGCTGCTGCACGTTCAGTTGACATCCCCCACTTCATGTAATAGAAAAGGCGAGTCTCTGCAAGAGCTTCTGATTGTCAACACGCATCTG TTATTTCCTCATAATTCCAGTCTGTCCATAGCAAGGCTGCATCAGGTCTATAAGATATTACAATATGTGGAAACATATCAGCGAGAAAATAAACTCGGTA GTGTGCCTGTCGTACTATCTGGCGATTGGAATGGAAGCAAACGAGGGCGAATATACAAATTCCTTCGCTCTCAGGGCTTTGTATCATCATATGACATTGC TCATAAGTACTCAGACAGTGATGATGATGCTCACAGGTGGGTGAGTCACCGAAACCATAGAGGTAACATCTGTGGTGTTGATTTCATATGGCTTCGTAAT CCTAATGAACCAAGGAAACCATTGCAGACAAGTTGGGCCGAAGCAGCATTTGGTATAATAAAGTATCAGTTCCAAAAGGGCTCGTTGAATGAGAGTGATG CATTCGCATTTCTGAAAGCTGACAACCCTGGTGATTTTATAACATATCCAACATTCTGCGATGGCCTTCGGCAGCTTCACTTGATCGGCCTTCCCCATGG ACTGAGTTTCCAGGAGACGGAAGATGTATGGAACGAAGCAGATGTTGACCGAAATGGAGCCGTCGATCATGAAGAATTTAAGAGGATGTGGAACTCATCG TGTTCGGTTGAAAGAGACGAGAACTCAAACTGCAGAGAGAGTGGACGGGAGATGGCGGAAGAAGTGATGGGTTTCATGGTGAAAGACGCGGTACTGTTTC CCAGAGAAGTGGAGAGAGGAATGTGGCCGGATAACTACTCCCTATCCGATCATGCTCGACTCACTGTCATTTTTTCGCCTGTTAGAATGCGGCTCACGGA AGAGAAAGTAGTATAA
AA sequence Show only first row Show all	>Lus10010095 pacid=23158882 polypeptide=Lus10010095 locus=Lus10010095.g ID=Lus10010095.BGIv1.0 annot-version=v1.0 MAIGLWQQVAVLDSVAANSGGAIPRPPPSASAKTSATATASPPPSMADDLSHISCTTFNILAPIYKRLDHQNQSLRESDFKSYWLSRNQMILEWLLMERT SIICLQEFWTGNEELVHMYEDKLCDAGYFTFQLARTNNRGDGLLMAVHKDYFRIINYKELLFNDFGDRVAQLLHVQLTSPTSCNRKGESLQELLIVNTHL LFPHNSSLSIARLHQVYKILQYVETYQRENKLGSVPVVLSGDWNGSKRGRIYKFLRSQGFVSSYDIAHKYSDSDDDAHRWVSHRNHRGNICGVDFIWLRN PNEPRKPLQTSWAEAAFGIIKYQFQKGSLNESDAFAFLKADNPGDFITYPTFCDGLRQLHLIGLPHGLSFQETEDVWNEADVDRNGAVDHEEFKRMWNSS CSVERDENSNCRESGREMAEEVMGFMVKDAVLFPREVERGMWPDNYSLSDHARLTVIFSPVRMRLTEEKVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02270			Calcium-binding endonuclease/e...		Lus10010095 [exp]	0	1
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Lus10036345 [exp]	2.2	0.7893
AT2G36895			unknown protein		Lus10001393 [exp]	3.7	0.7553
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	10.6	0.7496
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	11.0	0.7206
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	14.5	0.7242
AT2G37880			Protein of unknown function, D...		Lus10022595 [exp]	17.9	0.7023
AT2G19450		RDS1, DGAT1, AT...	TRIACYLGLYCEROL BIOSYNTHESIS D...		Lus10017154 [exp]	18.7	0.7123
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10036882 [exp]	20.1	0.7537
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	22.5	0.7059
AT4G14450		ATBET12	unknown protein		Lus10022200 [exp]	28.6	0.7120

Compare expression of checked genes

Lus10010095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.