Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09790 164 / 4e-48 COBL6 COBRA-like protein 6 precursor (.1) AT5G15630 131 / 7e-36 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 127 / 2e-34 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 116 / 3e-30 COBL2 COBRA-like protein 2 precursor (.1) AT5G60920 116 / 4e-30 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007217 [exp] 256 / 1e-83 AT1G09790 471 / 1e-164 COBRA-like protein 6 precursor (.1) Lus10029360 [exp] 187 / 5e-57 AT1G09790 499 / 7e-176 COBRA-like protein 6 precursor (.1) Lus10012598 [exp] 124 / 5e-33 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034379 [exp] 124 / 6e-33 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034666 [exp] 121 / 7e-32 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 119 / 4e-31 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 118 / 5e-31 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 118 / 7e-31 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 117 / 1e-30 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G219200 [exp] 162 / 9e-48 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G117100 [exp] 130 / 2e-35 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060200 [exp] 128 / 8e-35 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 125 / 2e-33 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 119 / 3e-31 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 117 / 8e-31 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 116 / 4e-30 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G167100 [exp] 98 / 2e-23 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1) Potri.017G098600 [exp] 92 / 2e-21 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 91 / 4e-21 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010097 pacid=23158870 polypeptide=Lus10010097 locus=Lus10010097.g ID=Lus10010097.BGIv1.0 annot-version=v1.0 ATGGCATCACCTTCTCCAAGATGCTGCGTTTCATTGTCGGCTTTCTACGACAGTACGATTCTACCTTGTACACAGTGTAGTGGCGGGTGTCAAGGACAAC GTGGATCAAGATGTGCCAAGTATGGGGAGAACCCATCTCTGCTGCAACAAAAGCAAGATCCAAATGAGGAGCAACCTCCATTTGTGAGATGTACAAACCA CATGTGCCCCACTAGGATTCATTGGCAATTTGAAGGAGAGCTACACACAGTACTGGAGAGTGAAGATCACCATCACCAACTTCAACATCATAAAGAACTA CTCCCAGTGGAATTTGGTGGTCCTGCATCCCAACTTGAAGAATATCACCCAAGTTTTCAGCTTCAACTATGCCCCCCTCGACCAATTCCGCTACACAAAG CGGGATGTTTTGGGGGATCAAATACTTCAAATGACATGCTCTTACAAGAAGGCGAGAATGGGAATGTTCAGAGTGAGATTCTGCTAGCTAAAGATGCAGA GGTGTTCACTTTCGGGGAAGGATGGGCTTTCCCTAGAAGGATTTTGTTTTATGGCGATGAATGTGTGATGCCACTGCCAGATGACTATCCAAGGCTCCCT GCTACTTCTTCTGCCTTTTCCTCCCTCAACTCAAATCCCATCCCCTTGTTTTCATTCTTCTCAATTCGGCTTTTTCTCTGCTTCTTTTAG
AA sequence Show only first row Show all	>Lus10010097 pacid=23158870 polypeptide=Lus10010097 locus=Lus10010097.g ID=Lus10010097.BGIv1.0 annot-version=v1.0 MASPSPRCCVSLSAFYDSTILPCTQCSGGCQGQRGSRCAKYGENPSLLQQKQDPNEEQPPFVRCTNHMCPTRIHWQFEGELHTVLESEDHHHQLQHHKEL LPVEFGGPASQLEEYHPSFQLQLCPPRPIPLHKAGCFGGSNTSNDMLLQEGENGNVQSEILLAKDAEVFTFGEGWAFPRRILFYGDECVMPLPDDYPRLP ATSSAFSSLNSNPIPLFSFFSIRLFLCFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	0	1
					Lus10010603 [exp]	1.0	0.9143
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10004251 [exp]	3.3	0.8640
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	3.5	0.9022
AT1G20925			Auxin efflux carrier family pr...		Lus10030715 [exp]	4.5	0.8793
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10001905 [exp]	4.9	0.8943
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10030185 [exp]	4.9	0.8610
AT3G18715		IDL4	inflorescence deficient in abs...		Lus10033523 [exp]	5.3	0.8231
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	5.7	0.9142
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10027504 [exp]	6.0	0.8102
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021158 [exp]	6.3	0.8698

Compare expression of checked genes

Lus10010097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.