Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01550 94 / 4e-23 NAC ANAC069, NTM2 NAC with Transmembrane Motif 2, NAC domain containing protein 69 (.1.2) AT4G35580 94 / 5e-23 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 91 / 1e-21 NAC ANAC014 NAC 014 (.1.2) AT4G17980 87 / 2e-21 NAC ANAC071 NAC domain containing protein 71 (.1) AT3G17730 86 / 7e-21 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G17260 87 / 1e-20 NAC ANAC086 NAC domain containing protein 86 (.1) AT1G65910 87 / 3e-20 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G49530 87 / 3e-20 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT3G03200 86 / 3e-20 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G24590 86 / 3e-20 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030174 [exp] 162 / 1e-50 AT4G35580 152 / 5e-43 NAC transcription factor-like 9 (.1.2.3) Lus10005144 [exp] 161 / 4e-50 AT4G35580 142 / 3e-39 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 100 / 7e-25 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 99 / 2e-24 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10015587 [exp] 96 / 1e-23 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10010148 [exp] 96 / 2e-23 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10032919 [exp] 95 / 4e-23 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10005143 [exp] 95 / 4e-23 AT1G33060 149 / 2e-39 NAC 014 (.1.2) Lus10030175 [exp] 94 / 1e-22 AT4G35580 146 / 1e-37 NAC transcription factor-like 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076000 [exp] 120 / 6e-35 AT4G35580 161 / 5e-47 NAC transcription factor-like 9 (.1.2.3) Potri.002G154200 [exp] 120 / 1e-34 AT4G35580 169 / 5e-50 NAC transcription factor-like 9 (.1.2.3) Potri.014G107900 [exp] 118 / 2e-33 AT4G35580 183 / 7e-55 NAC transcription factor-like 9 (.1.2.3) Potri.014G108000 [exp] 117 / 4e-33 AT4G35580 176 / 6e-52 NAC transcription factor-like 9 (.1.2.3) Potri.014G107700 [exp] 117 / 1e-32 AT4G35580 178 / 2e-52 NAC transcription factor-like 9 (.1.2.3) Potri.002G182300 [exp] 111 / 1e-30 AT4G35580 184 / 4e-55 NAC transcription factor-like 9 (.1.2.3) Potri.002G182000 [exp] 108 / 1e-29 AT4G35580 186 / 9e-56 NAC transcription factor-like 9 (.1.2.3) Potri.002G182400 [exp] 107 / 2e-27 AT4G35580 158 / 4e-42 NAC transcription factor-like 9 (.1.2.3) Potri.001G452700 [exp] 100 / 9e-25 AT1G33060 415 / 7e-137 NAC 014 (.1.2) Potri.014G108100 [exp] 96 / 5e-24 AT5G17260 139 / 3e-37 NAC domain containing protein 86 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10010098 pacid=23158887 polypeptide=Lus10010098 locus=Lus10010098.g ID=Lus10010098.BGIv1.0 annot-version=v1.0 ATGGAGGTTGCTCCTCATTTGGATCTTGCTTTTGTTGCAGCAGAGATGGGTTCTCCCCATACCTGCCATTCATTCAGGAAAGCATCAAGTGAAGTGGAGC ACGACGAGGCAATATGGTATGTCTTGTCACCTCCAGATTATAAGTATGCAAACAGCAAGCAAGTGAATAGGAAAACCAAGGCCGGTTACTGGAAACCCAC CGGCAAAGCAAGGATCGTTCGGGCTAAGAGTAGCCGCAACCAGATTGGAACGAAGAAGACTTTGGTTTTTTATAAAGGTCGGGTTCGTAAAGGAGTCAGG ACCCAGTGGATCATGCACGAGTACAAATCGTCCTCCACTTTCCCTCACCAACGAGATTTCCTTCTGTACAAGTTAATGAAGAAATCTTCATCAGAAGGTA CTAGTAATGGTGGTGATTATGAGGATGATGGAGAAACAAGTAGTAGTAATTTTGAATCATTCCCTTTCAACTCCTACAGCCAACTATGA
AA sequence Show only first row Show all	>Lus10010098 pacid=23158887 polypeptide=Lus10010098 locus=Lus10010098.g ID=Lus10010098.BGIv1.0 annot-version=v1.0 MEVAPHLDLAFVAAEMGSPHTCHSFRKASSEVEHDEAIWYVLSPPDYKYANSKQVNRKTKAGYWKPTGKARIVRAKSSRNQIGTKKTLVFYKGRVRKGVR TQWIMHEYKSSSTFPHQRDFLLYKLMKKSSSEGTSNGGDYEDDGETSSSNFESFPFNSYSQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Lus10010098 [exp]	0	1
					Lus10020692 [exp]	1.0	0.9727
					Lus10039384 [exp]	2.4	0.9108
					Lus10042653 [exp]	13.4	0.8017
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037090 [exp]	21.4	0.6795
					Lus10019564 [exp]	27.3	0.7846
					Lus10002411 [exp]	30.5	0.7829
AT5G13825			unknown protein		Lus10000042 [exp]	33.7	0.7814
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10039546 [exp]	33.8	0.7550
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002774 [exp]	35.6	0.7673
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	40.0	0.7658

Compare expression of checked genes

Lus10010098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.