Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01020 205 / 2e-66 ARV1 Arv1-like protein (.1.2) AT4G01510 179 / 2e-56 ARV2 Arv1-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007219 [exp] 237 / 7e-80 AT1G01020 139 / 2e-41 Arv1-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G107300 [exp] 278 / 3e-95 AT1G01020 228 / 3e-75 Arv1-like protein (.1.2) Potri.002G181700 [exp] 103 / 3e-27 AT1G01020 84 / 1e-20 Arv1-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04161 [flax] [poplar] Arv1 Arv1-like family
Representative CDS sequence Show only first row Show all	>Lus10010099 pacid=23158864 polypeptide=Lus10010099 locus=Lus10010099.g ID=Lus10010099.BGIv1.0 annot-version=v1.0 ATGGGATACCGGTGTGTAGACTGTGGATTTCCTATCACAACACTGTACGTTCAGTACTCTCCTGGAAATATTCGCCTCATGAAATGCGAAAACTGCAAAG CGGTTGCAGACGAGTACATCGAATGCGAGTTCATGATTATCTTGATCGATTTGATTCTGCACAAGCCGAAAGCGTACAGGCATCTCCTCTTCAATGTCCT CAATCAGAAAACCGCAGTTGTTGAGGGTTTGTTGCGGAACGCTACTTTTGATTTCATTCTTCTGGAGTTTTCAATTCCAGATAGAAGTGTGCTTTTGGAT TGGCATGAAGATGAACTGAAGGGTTCTTCATCTGGCATAAGATACCAAAAGGTGTTCACGGATATTCTCGTGGGAAATTCACTTTTTCTGTGTGTTTTTC TTCTAGCTGCAAAGATCATGCTGAATTCCTCTATAACTTTCTCCAGATTCCGGGACCTTTTGCTTGTAATACTGGTGTCAAGTTATTTTAAGATCTTCCT CGTTACCATGATGGTCTGGAAATTTCCTCCCTCGGTAATACACATCATTGATCTTTTCGTCTTGTCGTCTAATATGGTGGCACTTAAAGTAACGTCGGAC TCAACCATGGCAAGATGCTGGGGAGTTTGTTTATGTGCTCATGCCGTTAAGCTAATTGCCACTCTTGTCAGCCATGGGATAAATATCTACTTCCAGGACT CAAACTGA
AA sequence Show only first row Show all	>Lus10010099 pacid=23158864 polypeptide=Lus10010099 locus=Lus10010099.g ID=Lus10010099.BGIv1.0 annot-version=v1.0 MGYRCVDCGFPITTLYVQYSPGNIRLMKCENCKAVADEYIECEFMIILIDLILHKPKAYRHLLFNVLNQKTAVVEGLLRNATFDFILLEFSIPDRSVLLD WHEDELKGSSSGIRYQKVFTDILVGNSLFLCVFLLAAKIMLNSSITFSRFRDLLLVILVSSYFKIFLVTMMVWKFPPSVIHIIDLFVLSSNMVALKVTSD STMARCWGVCLCAHAVKLIATLVSHGINIYFQDSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10010099 [exp]	0	1
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010096 [exp]	13.0	0.7014
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10023696 [exp]	15.3	0.7344
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10001106 [exp]	17.4	0.7310
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Lus10030591 [exp]	39.2	0.7042
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10019125 [exp]	48.2	0.6226
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10005143 [exp]	48.6	0.6716
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10007216 [exp]	52.4	0.6499
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	85.0	0.6885
AT2G25760			Protein kinase family protein ...		Lus10037565 [exp]	90.0	0.6673
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10015664 [exp]	92.2	0.6838

Compare expression of checked genes

Lus10010099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.