Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01460 192 / 3e-61 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 194 / 4e-61 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 182 / 3e-57 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G24140 162 / 3e-48 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G72210 153 / 6e-46 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 143 / 4e-42 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 126 / 9e-37 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 123 / 4e-34 bHLH bHLH071 beta HLH protein 71 (.1) AT5G65320 114 / 5e-31 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 95 / 3e-23 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012603 [exp] 302 / 3e-106 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 167 / 6e-50 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029950 [exp] 151 / 1e-44 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 150 / 2e-44 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 145 / 7e-42 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001271 [exp] 130 / 6e-37 AT1G72210 194 / 1e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009475 [exp] 128 / 3e-36 AT1G72210 199 / 8e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015902 [exp] 122 / 3e-33 AT1G72210 235 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034031 [exp] 117 / 2e-32 AT3G06120 225 / 8e-75 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180300 [exp] 233 / 3e-76 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G106300 [exp] 222 / 7e-72 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G039800 [exp] 167 / 4e-51 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 167 / 5e-51 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 167 / 3e-50 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 163 / 1e-49 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G097600 [exp] 160 / 2e-48 AT1G72210 167 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G071100 [exp] 159 / 3e-48 AT1G72210 177 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 160 / 7e-48 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G141100 [exp] 145 / 5e-43 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010101 pacid=23158928 polypeptide=Lus10010101 locus=Lus10010101.g ID=Lus10010101.BGIv1.0 annot-version=v1.0 ATGACACACATTACGGTGGAGAGGAACCGCCGGAGACAGATGAACGAGCACCTCAACTCGCTACGATCCCTCATGCCCCCGTCCTACGTTCACAGGGGAG ATCAAGCGTCGATTATAGGAGGAGCGATAGATTTTGTGAAGGAACTGGAGCAACTTGCGCAGTGCCTGGAAGCGCAGAAGAGGATGAAATTAGGAGAAGG CGGAGCAGTTTGCGAAATGATGAGGACCACGGCGGAGGAGGAGGGAGGAAGGGTAAGAGCAGCGGTGGAGAAATCGGAGACGGCGGAGATAGAGGTGACG GCGATAGAGAACCACGCGAATTTGAAGGTGAAGTGCGAGAGGAGGAGAGGGCAACTGGTGAGAGCCATAGTTGGGTTGGAGGAACTGGGACTCACCGTCT TGCACCTCAACATTGCTTCTTCTTCAGATTCTTCGTCGACTATTTTATATTCTTTCAATCTCAAGATAGAGGAAGAATGCAAGATAGGATCGGCGGATGA GGTGGCAGCAGCTGTGCATCAGATCTTCACCCATCATCAACAACAACAACGGCTACCTACCTAA
AA sequence Show only first row Show all	>Lus10010101 pacid=23158928 polypeptide=Lus10010101 locus=Lus10010101.g ID=Lus10010101.BGIv1.0 annot-version=v1.0 MTHITVERNRRRQMNEHLNSLRSLMPPSYVHRGDQASIIGGAIDFVKELEQLAQCLEAQKRMKLGEGGAVCEMMRTTAEEEGGRVRAAVEKSETAEIEVT AIENHANLKVKCERRRGQLVRAIVGLEELGLTVLHLNIASSSDSSSTILYSFNLKIEEECKIGSADEVAAAVHQIFTHHQQQQRLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	0	1
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10012603 [exp]	1.0	0.9284
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031566 [exp]	2.4	0.9248
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023110 [exp]	2.8	0.8989
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10017349 [exp]	3.9	0.9036
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	4.5	0.8858
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	6.7	0.8861
AT2G40760			Rhodanese/Cell cycle control p...		Lus10034243 [exp]	7.7	0.8774
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	8.8	0.8905
AT4G33940			RING/U-box superfamily protein...		Lus10014366 [exp]	10.2	0.8560
AT5G18590			Galactose oxidase/kelch repeat...		Lus10034163 [exp]	12.6	0.8288

Compare expression of checked genes

Lus10010101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.