Plant FIBer expression Database

Lus10010103 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01410 167 / 6e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
AT3G44220 84 / 6e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
AT5G22200 82 / 6e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
AT5G06330 81 / 8e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
AT2G35970 78 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
AT2G35960 78 / 2e-17 NHL12 NDR1/HIN1-like 12 (.1)
AT4G09590 76 / 1e-16 NHL22 NDR1/HIN1-like 22 (.1)
AT3G52470 74 / 5e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
AT3G11660 73 / 1e-15 NHL1 NDR1/HIN1-like 1 (.1)
AT5G53730 68 / 8e-14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030193
[exp]
166 / 1e-50 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10012605
[exp]
115 / 8e-33 AT4G01410 84 / 1e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10021286
[exp]
82 / 8e-19 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10043410
[exp]
82 / 1e-18 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10016960
[exp]
78 / 1e-17 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1)
Lus10013327
[exp]
77 / 8e-17 AT3G11660 147 / 2e-44 NDR1/HIN1-like 1 (.1)
Lus10034175
[exp]
75 / 4e-16 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10004202
[exp]
74 / 8e-16 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1)
Lus10029406
[exp]
72 / 2e-15 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G180000
[exp]
201 / 2e-65 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.014G106100
[exp]
196 / 3e-63 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.006G204200
[exp]
87 / 5e-21 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1)
Potri.009G019600
[exp]
85 / 4e-20 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.016G071500
[exp]
81 / 2e-18 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1)
Potri.005G088000
[exp]
79 / 9e-18 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.012G006000
[exp]
68 / 9e-14 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.006G228600
[exp]
66 / 1e-12 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein
Potri.015G002400
[exp]
64 / 2e-12 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Potri.018G052500
[exp]
60 / 1e-10 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF03168 LEA_2 Late embryogenesis abundant protein
Representative CDS sequence
>Lus10010103 pacid=23158910 polypeptide=Lus10010103 locus=Lus10010103.g ID=Lus10010103.BGIv1.0 annot-version=v1.0
ATGGCAGAGCACCACTTACCACCGGAAGACGAGACCTCCGATCCAAAACACGCCTCACCACGGCCACCACGTCGATCATATAGTTCCTACTACGGCCACA
GCAACGTCGCTACCGCAATCACCGCCATCCTCCTAATCCTCGCCATAATCTTCCTCATCCTCTGGCTCGTCTACCGCCCCCACAAACCCACCTTCAACAT
AGCAGCTGCCGCCGTCTACTCCCTCAATGTCACTACTCCTCCTTTCCTAGCCACCGCTTTCCAGTTCACCATCTTCACCATCCTCGCCCGCAACCCCAAC
CGCCGCGTCACCATACTCTACGACCGCCTCACTGCCTACGTCATGTACCGCAACCAGCCGATCACTGTCCCGGTACCCCTGCCCCCGCTTCACCACCACA
CGAAGACTACCGTGGCCCTGTCACCTATAATCGGTGCTGAAGGGCAGGTGCCTGTTTCAGAGGAGATTGTGAATGGGCTGGAGCAGGACGAAGGGTATGG
CGTTGTGCCGATGACAGTTGTAATAGTGGGTAAGCGGCGGTGGAGGGCTGGCGGTATACGGACTGGGAGGCGTGGGGTTTATGTGAGCTGTGATGTTTGG
GTCGGGTTGAAGCGGGGGGTTACGGGTCAGGTTCCCTTGCTTGGCTCTCCTCAGTGTAGAGTTGATGTGTAA
AA sequence
>Lus10010103 pacid=23158910 polypeptide=Lus10010103 locus=Lus10010103.g ID=Lus10010103.BGIv1.0 annot-version=v1.0
MAEHHLPPEDETSDPKHASPRPPRRSYSSYYGHSNVATAITAILLILAIIFLILWLVYRPHKPTFNIAAAAVYSLNVTTPPFLATAFQFTIFTILARNPN
RRVTILYDRLTAYVMYRNQPITVPVPLPPLHHHTKTTVALSPIIGAEGQVPVSEEIVNGLEQDEGYGVVPMTVVIVGKRRWRAGGIRTGRRGVYVSCDVW
VGLKRGVTGQVPLLGSPQCRVDV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G01410 Late embryogenesis abundant (L... Lus10010103
[exp]
0 1

Lus10010103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.