Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46760 646 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 627 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 618 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 607 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 602 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G11540 399 / 2e-132 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56470 305 / 1e-100 FAD-dependent oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012609 [exp] 779 / 0 AT2G46760 642 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012610 [exp] 717 / 0 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10002688 [exp] 536 / 0 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 516 / 4e-178 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10004735 [exp] 498 / 9e-171 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10038620 [exp] 405 / 2e-134 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010107 [exp] 238 / 7e-75 AT2G46760 262 / 2e-84 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 137 / 1e-33 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10010106 [exp] 95 / 1e-22 AT2G46760 190 / 4e-58 D-arabinono-1,4-lactone oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178400 [exp] 664 / 0 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178300 [exp] 664 / 0 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.018G039600 [exp] 419 / 3e-140 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF04030 [flax] [poplar] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Lus10010105 pacid=23158862 polypeptide=Lus10010105 locus=Lus10010105.g ID=Lus10010105.BGIv1.0 annot-version=v1.0 ATGCTTTTATTACGTTACCATGTCTCTCTTCGTTACATTGACAAGCTCAACATCTCCACAAGACCCAATCCAATGCTCCTCCCCAAACAACACCAACTGC ACAATCACCAACACCTACGGCGCCTTCCCCGACCTATCCACGTGTCGTGCGTCCCGCGTGGCGTACCCCACCACGGAGCAAGAGCTGATCGCCACGGTAG CGGGCGCGCCGCGCCCGCCCGGCGGGCAGAGGAGGGACACCAGAAAGTGGCAACAAGCACTTCCCACAGCATCCCCAAACTGGTCTGCCTCGACGACGAC GCTGCCGCTGTCGGCGGACTCCTCATAAGCACCAAGTTCCTCAACCGGGTGTTGGCGGTGGACAGTGCGGCGATGACGATGAGCGTGGAGAGTGGGGTGA CGCTACGCCAGCTGGTGGAGGAGGCGGCTAAGGCAGGGATGGCGCTGCCGTACTCGCCGTATTGGTGGGGGTTGACTGTCGGAGGAATGATTGGTACTGG GGCCCACGGGAGTAGTCTTTGGCGGGAGGGAGGTACTGCCGTGCATGATTTTGTGGTGGAGATGACGGTGGTGAGTCCGGGGGATGTCTCCGATGGATAT GTGAAGGTGAGGACGTTGAAGGAGAGGGATAGTGATATCAATGCTGCCAAGGTCTCCCTCGGTGTTCTTGGGGTTGTCTCTAAGGTGACTTTTAAACTTG AGCCGATGTTCAAGAGATCCGTAACTTTCGTAGCAAGGAATGATTCAAATTTTGGAGATGAATCAACCAAGTTTGGACGCCAACACGAGTTCGCAGATTT CTCATGGTATCCCAGTCAGGGTAGAGTCGTATATCGAATCGACGATCGAGTGCCTTCTAACACTACCGGAAACGGCTTAAACGACTACGTCCCTTTCCGT TCTACATCATCGCTCCTACTGGGAGGCGTCAGAACCGCAGAGGAAGCGCAGGAATTTTTCAAAGACAGTAACGGGAAATGCGTCAGCGGCAGGCTCACCA CGGCCACACTCCTCACCGCCGCCTTCGGACTAACCAACAACGGCTTCATCTTCACCAGCTACCCAATAATCGGCTTCCAAAACCGCCTCCAATCCTCCGG GTCATGCCTCGACAGCTCGAACGACAGCTTCATTACAGCATGCGCCTGGGACTCGCGAATCAGGGCCGAGTACTTCCACCAGACCACCTTCAGCGTCGCT CTCTCTGTCGTAAAAGACTTCATTCTCGACGTCCAAAAGCTAGTAACCCTAGACCCGGACAAGTTATGCATGCTTGACCAATACAACGGCATCCTCATGC GATACGTCACGCAGTCAACTGCCTACTTGGGGAAGCAAGAAGACGGATTGGACTTCGACATTACTTACTATAGAAGCAAAGACCCCATGCAGCCGAGGCT TTACGAGGACGTGTTGGAGGAGATTGAGCAGATGGCTATGTTTAAGTACGGAGCTTTGCCGCATTGGGGCAAGAATCGGAACTTGGCGTTTGTCGGGGCG ATCGATAGGTATGAGAAGAGGGGGGAGTTTTTGGAGGTTAAGGAGAGGTTTGATCCGTTGGGGTTGTTTTCGAGCGAGTGGACCGATCAGGTTCTTGGGT TGAGAAGTGGGTTGACTACTTCGAAAGAAGGGTGTGCGCTGGAAGGTATGTGTATATGTTGGGAGGATGCTCACTGTGCGCCTAAGGATGGATACTTTTG TAGGCCAGGGAAAGTTTACACGGATGCTAGGGTTTGTACTTATATTGATGACTCTACTTATTAA
AA sequence Show only first row Show all	>Lus10010105 pacid=23158862 polypeptide=Lus10010105 locus=Lus10010105.g ID=Lus10010105.BGIv1.0 annot-version=v1.0 MLLLRYHVSLRYIDKLNISTRPNPMLLPKQHQLHNHQHLRRLPRPIHVSCVPRGVPHHGARADRHGSGRAAPARRAEEGHQKVATSTSHSIPKLVCLDDD AAAVGGLLISTKFLNRVLAVDSAAMTMSVESGVTLRQLVEEAAKAGMALPYSPYWWGLTVGGMIGTGAHGSSLWREGGTAVHDFVVEMTVVSPGDVSDGY VKVRTLKERDSDINAAKVSLGVLGVVSKVTFKLEPMFKRSVTFVARNDSNFGDESTKFGRQHEFADFSWYPSQGRVVYRIDDRVPSNTTGNGLNDYVPFR STSSLLLGGVRTAEEAQEFFKDSNGKCVSGRLTTATLLTAAFGLTNNGFIFTSYPIIGFQNRLQSSGSCLDSSNDSFITACAWDSRIRAEYFHQTTFSVA LSVVKDFILDVQKLVTLDPDKLCMLDQYNGILMRYVTQSTAYLGKQEDGLDFDITYYRSKDPMQPRLYEDVLEEIEQMAMFKYGALPHWGKNRNLAFVGA IDRYEKRGEFLEVKERFDPLGLFSSEWTDQVLGLRSGLTTSKEGCALEGMCICWEDAHCAPKDGYFCRPGKVYTDARVCTYIDDSTY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010105 [exp]	0	1
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10006669 [exp]	5.3	0.7934
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10027216 [exp]	5.3	0.7208
					Lus10022938 [exp]	6.8	0.7654
AT3G04020			unknown protein		Lus10005954 [exp]	9.6	0.6575
					Lus10002344 [exp]	11.3	0.7627
					Lus10012943 [exp]	12.4	0.7516
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10026333 [exp]	14.6	0.7650
					Lus10018646 [exp]	15.2	0.7579
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013916 [exp]	16.7	0.7451
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10038672 [exp]	17.5	0.7088

Compare expression of checked genes

Lus10010105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.