Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46760 154 / 1e-44 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 153 / 2e-44 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 147 / 2e-42 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 139 / 4e-39 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 137 / 2e-38 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G11540 102 / 5e-26 D-arabinono-1,4-lactone oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002688 [exp] 127 / 7e-35 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 126 / 2e-34 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10004735 [exp] 120 / 2e-32 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012610 [exp] 115 / 1e-30 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 115 / 2e-30 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10010105 [exp] 94 / 4e-23 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10038620 [exp] 90 / 1e-21 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012609 [exp] 52 / 3e-08 AT2G46760 642 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178300 [exp] 160 / 7e-47 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178400 [exp] 157 / 1e-45 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.018G039600 [exp] 83 / 3e-19 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10010106 pacid=23158866 polypeptide=Lus10010106 locus=Lus10010106.g ID=Lus10010106.BGIv1.0 annot-version=v1.0 ATGATCATCATTATCATCATCATCATCTCTCTCCGACCAGCAAGCTGCACACCTCCGGAAGAGCCAATCAAGTGCACCTCCACAAGCAACACCAACTGCA CCATCACAAACTCCTACGGCGCATTCCCTGACCGTTCCACGTGTCGCGCATCCAACGCCGCCTACCCAACCACCGAGCAAGAACTCATCGACATCGTCCA AAACGCCACGAGGGCTCAACGGAAGATGAAAGTGGCCACAAGATACTCCCACAGCATCCCCAAGCTGGTCTGTCCCGACGGCGACGACGGCCTCCTCATA AGCACCAAGTTCCTCAACCGGGTGTTGGCGGTGGACAGTGCGGCGATGACGATGAGCGTGGAGAGTGGGGTGACGCTACGCCAGCTGGTGGAGGAGGCGG CTAAGGCAGGGATGGCTGACGCTGCGGCAGCTGGTGGGAGAGGCGGCTAA
AA sequence Show only first row Show all	>Lus10010106 pacid=23158866 polypeptide=Lus10010106 locus=Lus10010106.g ID=Lus10010106.BGIv1.0 annot-version=v1.0 MIIIIIIIISLRPASCTPPEEPIKCTSTSNTNCTITNSYGAFPDRSTCRASNAAYPTTEQELIDIVQNATRAQRKMKVATRYSHSIPKLVCPDGDDGLLI STKFLNRVLAVDSAAMTMSVESGVTLRQLVEEAAKAGMADAAAAGGRGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010106 [exp]	0	1
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010107 [exp]	1.0	0.9637
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	6.0	0.9206
AT5G17890		CHS3, DAR4	CHILLING SENSITIVE 3, DA1-rela...		Lus10025852 [exp]	6.9	0.8931
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	8.8	0.8754
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10021467 [exp]	15.4	0.8412
AT1G27080		NRT1.6	nitrate transporter 1.6 (.1)		Lus10038615 [exp]	22.0	0.8624
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	22.0	0.8938
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	24.4	0.8916
AT1G53165		ATMAP4KALPHA1 ,...	Protein kinase superfamily pro...		Lus10028163 [exp]	24.8	0.8736
AT5G45290			RING/U-box superfamily protein...		Lus10035680 [exp]	28.5	0.8880

Compare expression of checked genes

Lus10010106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.