Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46760 261 / 3e-84 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 256 / 3e-82 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 252 / 7e-81 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 248 / 2e-79 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 244 / 5e-78 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G11540 134 / 2e-36 D-arabinono-1,4-lactone oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010105 [exp] 268 / 4e-87 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012609 [exp] 258 / 3e-84 AT2G46760 642 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 188 / 4e-56 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10002688 [exp] 184 / 5e-55 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10004735 [exp] 184 / 1e-54 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10038620 [exp] 155 / 4e-44 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 42 / 0.0004 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10012610 [exp] 0 / 1 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178400 [exp] 259 / 3e-83 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178300 [exp] 256 / 5e-82 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.018G039600 [exp] 165 / 8e-48 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 40 / 0.0008 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010107 pacid=23158924 polypeptide=Lus10010107 locus=Lus10010107.g ID=Lus10010107.BGIv1.0 annot-version=v1.0 ATGGCGCTTCCGTACACGCCCTACTGGTGGGGGTTGACCGTTGGAGGAATGCTGGGGACTGGAGCCCACGGGAGCAGTCTTTGGGGGAGAGGGAGCGCTA TTCATGACTATGTTGTTGAGCTGACGGTGGTCAGTCCGGGAAGAGCCTCCGATGGGTTTGTGAAAGTTAGGACGTTGAAGGAAAGTAATGGTGATATTAA TGCGGCCAAGGTATCCCTCGGGGTCCTCGGAGTTATTTCTAAGGTGACGCTGAAACTGCAACCCTTGTTCAAGCGGTCCCTAACCTACGTGGAAAAAGAT GACAAAGATTTCGCAGATGAAGCAGTTACCTTCGGACGCAAGCACGAGTTTGCAGACTTTTCTTGGTTTCCAAGTCAGAGCAAAGTCATCTACAGAATAG ACGACCGTGTCCCTTCCAATACCTCGGGGAATGGCAATAACGATTTCATTCCTTTCCGCTCCACTCTCTCCCTCGGTTTGGCCATCATCAGAACCGCAGG AAAGTCAAGAATCTACAAAGGCGGCCAGCGCGAAATGCGCGAGCGGGAAGTTCCGGTCATCGACACTCAAAACGACAGGCTTCGGAATAACCAACAACGG GCTCATCTTCACCGGCTACCCGATAATCGGCTACCACAACCGTCTCCAAGCGGCCGGGGCGTGTTTTGA
AA sequence Show only first row Show all	>Lus10010107 pacid=23158924 polypeptide=Lus10010107 locus=Lus10010107.g ID=Lus10010107.BGIv1.0 annot-version=v1.0 MALPYTPYWWGLTVGGMLGTGAHGSSLWGRGSAIHDYVVELTVVSPGRASDGFVKVRTLKESNGDINAAKVSLGVLGVISKVTLKLQPLFKRSLTYVEKD DKDFADEAVTFGRKHEFADFSWFPSQSKVIYRIDDRVPSNTSGNGNNDFIPFRSTLSLGLAIIRTAGKSRIYKGGQREMREREVPVIDTQNDRLRNNQQR AHLHRLPDNRLPQPSPSGRGVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010107 [exp]	0	1
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010106 [exp]	1.0	0.9637
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031326 [exp]	6.6	0.9430
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10022231 [exp]	14.0	0.9327
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	14.8	0.9336
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	15.5	0.9269
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	15.7	0.9203
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	19.0	0.8891
AT5G06610			Protein of unknown function (D...		Lus10013534 [exp]	21.9	0.9261
AT1G22030			unknown protein		Lus10019943 [exp]	22.5	0.9319
AT5G13250			RING finger protein (.1)		Lus10001802 [exp]	23.3	0.9150

Compare expression of checked genes

Lus10010107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.