Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01120 827 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G26640 647 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 642 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G19440 624 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT5G43760 622 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT2G16280 609 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT2G26250 589 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT2G46720 577 / 0 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT1G68530 569 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34510 556 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012611 [exp] 1021 / 0 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10002691 [exp] 942 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10030209 [exp] 938 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10019446 [exp] 631 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10043300 [exp] 631 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10026345 [exp] 623 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10042318 [exp] 621 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10006637 [exp] 621 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10001657 [exp] 608 / 0 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178000 [exp] 890 / 0 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G104300 [exp] 864 / 0 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.018G032200 [exp] 671 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 662 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 657 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 642 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079300 [exp] 641 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 627 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.009G116700 [exp] 625 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.010G079500 [exp] 625 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10010108 pacid=23158885 polypeptide=Lus10010108 locus=Lus10010108.g ID=Lus10010108.BGIv1.0 annot-version=v1.0 ATGGACAAGGAAAGGCTCACCGCCGAGATGGCCTTCAAAGACTCCACCTCCGCCGTCATCAAAATCCGTCAACGCTTGCCAGATTTCCTCCAGTCCGTTA AGCTCAAGTACGTCAAGTTAGGCTACGGTTACTCATGCAACCCGGCCACGGTGCTCTTGTTCCTCATTATCCTCCCTTTGTTCCTAACCACCCTCGTCCA GTTCACCGGCTTGGAAATCGACCGGTTTTATCAGGTCTGGTCCACCCGGTCCCTTCAGCTTCGAGACATCGACGAGGCCACCACTCTAGCCGGTTCGGCC GTCCTTCTCTTCTTCCTGGGCCTCTACTGGGCCAAACGCTCCAGGCCCATCTACCTCGTCGACTTCGCCTGTTACAAGCCGGAAGATGAGAGAAAGATCT CCGTCGACTCCTTCCTCGAAATAAGCGAGGAAAGCGGCAGCTTCCAAGACGAAACCCTCAACTTCCAAACCCGGATTTCCAAACGGTCCGGGTTGGGAGA CGAGACGTACCTGCCACGTGGCATTACGTCCCAGCCGCCAAACTTGTGCATGGCCGAAGCTAGAGCGGAAGCCGAAGCCGTGATGTTCGGCGCTCTCGAC GCGCTGTTCGAGAAGACCGGAGTCAAACCGAACGACATAGGGATCCTTATCGTGAATTGCAGCCTGTTCAATCCCACGCCGTCGTTATCGGCCATGATCG TCAACCACTACAAGCTCCGTACGGACATCAAGAGTTACAACCTGGGCGGGATGGGCTGCAGCGCTGGGCTTATTTCCATCGCACTGGCCCAAGACTTGTT AAAGGCGAATCCTAATACATACGCTGTCGTTTTGAGCACGGAGAACATCACGCTCAACTGGTACTTCGGCAACGACAGGTCAATGCTTCTCTGTAACTGC ATCTTCCGCATGGGTGGGGCCGCGGTTTTACTATCCAACAAGGCACGTGATAGGTCACGCTCCAAGTACCAGCTGGTCCACACTGTCCGGACCCACAAGG GAGCTGACGACAGGAACTACAACTGCGTGTACCAAAAGGAAGACGAGAAGGGAAACGTCGGGGTGTCACTGGCACGCGAATTAATGGCGGTTGCTGGGGA CGCGCTCAAGACAAACATCACAACGCTGGGCCCACTGGTCCTCCCGCTGACTGAGCAGTTGACGTTCTTCGTCTCGCTGGTCCGCCGCAAGGTGTTCAAG GCGCGCGTCAAGCCTTACATCCCGGATTTCAAGCTGGCGTTCGAGCATTTCTGCATCCACGCTGGAGGGCGAGCCGTGCTGGACGAGCTGGAGAAGAACT TGCAGCTGAGCGAGTGGCATATGGAGCCGTCGAGGATGACGCTTCATAGATTCGGGAACACGTCGAGCAGCTCGCTCTGGTATGAGCTGGCGTACACCGA AGCTAAAGGACGGGTGGGGCATGGGGACCGGGTGTGGCAGATTGCTTTCGGGTCAGGGTTTAAGTGTAACAGCGCGGTGTGGAAAGCGCTGAGGCCCATA TCGGTACAGGAGATGAAAGGGAACCCATGGGTTGACTCTATTGACAGGTACCCGGTCAAACTTCCAAGCGCGTGA
AA sequence Show only first row Show all	>Lus10010108 pacid=23158885 polypeptide=Lus10010108 locus=Lus10010108.g ID=Lus10010108.BGIv1.0 annot-version=v1.0 MDKERLTAEMAFKDSTSAVIKIRQRLPDFLQSVKLKYVKLGYGYSCNPATVLLFLIILPLFLTTLVQFTGLEIDRFYQVWSTRSLQLRDIDEATTLAGSA VLLFFLGLYWAKRSRPIYLVDFACYKPEDERKISVDSFLEISEESGSFQDETLNFQTRISKRSGLGDETYLPRGITSQPPNLCMAEARAEAEAVMFGALD ALFEKTGVKPNDIGILIVNCSLFNPTPSLSAMIVNHYKLRTDIKSYNLGGMGCSAGLISIALAQDLLKANPNTYAVVLSTENITLNWYFGNDRSMLLCNC IFRMGGAAVLLSNKARDRSRSKYQLVHTVRTHKGADDRNYNCVYQKEDEKGNVGVSLARELMAVAGDALKTNITTLGPLVLPLTEQLTFFVSLVRRKVFK ARVKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSEWHMEPSRMTLHRFGNTSSSSLWYELAYTEAKGRVGHGDRVWQIAFGSGFKCNSAVWKALRPI SVQEMKGNPWVDSIDRYPVKLPSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10010108 [exp]	0	1
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10012611 [exp]	1.0	0.9509
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027725 [exp]	2.8	0.8501
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10041177 [exp]	3.5	0.8355
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10023318 [exp]	5.7	0.8190
AT3G55360		ECR, CER10, ATT...	ENOYL-COA REDUCTASE, ECERIFERU...		Lus10005162 [exp]	8.5	0.7586
					Lus10027092 [exp]	9.2	0.7314
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10021895 [exp]	11.4	0.8120
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10027727 [exp]	15.6	0.7564
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006248 [exp]	16.5	0.7672
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10000101 [exp]	17.7	0.7959

Compare expression of checked genes

Lus10010108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.