Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01180 386 / 3e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030709 [exp] 340 / 7e-117 AT1G01180 350 / 3e-121 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013195 [exp] 338 / 2e-116 AT1G01180 353 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012612 [exp] 214 / 2e-70 AT1G01180 181 / 3e-58 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G177500 [exp] 410 / 7e-145 AT1G01180 383 / 4e-134 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G103800 [exp] 389 / 2e-136 AT1G01180 373 / 2e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04989 [flax] [poplar] CmcI Cephalosporin hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10010109 pacid=23158890 polypeptide=Lus10010109 locus=Lus10010109.g ID=Lus10010109.BGIv1.0 annot-version=v1.0 ATGAAAGACCAACTTCACCATCTTCTTACCATCATTCGGAAATCGCGACTCCAAGTCTTCAAATTCCTCAATTCAAACTCAGGTTACTTCACCCTTCTCT TTCTAGTCTACCTACTCGGCTACTTCTCCGCCCGCCGTCACCCTGCTTCTCCACCAAAACAACCAACGTCGTCCACCTCCCCGGATCCCAACCAACTCGA CGACGCAACCACCGGCGTTACTGTACAAACTCCTACTACACCCAGCAGCAAGATGATCAGCGAGTTTCGAGTCACCACCCGCTGCGCCGGGCGACTTCCC GCCGAAGCCGTCCGGCAAACGGTACTCGATCGAGTATACGACGGGGTATCTCCGTTCCAGGACTTCCCTCCGCCGCACGTTTCGGGGCTCATCCGGGAGA GAACTATCAGAGGTTGGGGCTCATACGGCACCGTATTCGGTACCCTCATCCAGAAAGTGAGGCCACGTGTAATCATCGAGGTGGGGACTTTTCTGGGGGC GTCGGCGATCCACATGGCGGCGTTGACTCGCGAGCTCGGGCTGGAGACCGTGATTCTGTGCGTCGACGATTTCCGCGGGTGGCCCGGATTTCGAGACAAG TTCGAGTTCGTTAAGTATGTAAACGGCGACGTTTTATTGCTGTATCAGTTTATGCAGAACGCGGCGTACAGCAACTCGACCGGGTCGGTTTTGCCCGTGC CGTTCTCGTCCGGGTCGGCGCTGCAGAAGCTGTGTGAGTGGGGGGTGTACGGGGATTTGATAGAGATCGATGCGGGTCATGATTTTAACTCGGCTTGGGC GGATATAAACCGGGCTTACCGGATATTGAGACCCGGTGGAGTGATATTCGGGCATGATTATTTTACGGTGGCGGATAATAGGGGTGTGAGAAGGGCGGTA AATCTGTTTGCCCAAATGAATGGGCTGAAAGTGAGAGCTGATGGTCAGCATTGGGTCATTGACTCTTAG
AA sequence Show only first row Show all	>Lus10010109 pacid=23158890 polypeptide=Lus10010109 locus=Lus10010109.g ID=Lus10010109.BGIv1.0 annot-version=v1.0 MKDQLHHLLTIIRKSRLQVFKFLNSNSGYFTLLFLVYLLGYFSARRHPASPPKQPTSSTSPDPNQLDDATTGVTVQTPTTPSSKMISEFRVTTRCAGRLP AEAVRQTVLDRVYDGVSPFQDFPPPHVSGLIRERTIRGWGSYGTVFGTLIQKVRPRVIIEVGTFLGASAIHMAALTRELGLETVILCVDDFRGWPGFRDK FEFVKYVNGDVLLLYQFMQNAAYSNSTGSVLPVPFSSGSALQKLCEWGVYGDLIEIDAGHDFNSAWADINRAYRILRPGGVIFGHDYFTVADNRGVRRAV NLFAQMNGLKVRADGQHWVIDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10010109 [exp]	0	1
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	10.8	0.8649
					Lus10038309 [exp]	16.0	0.8406
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10029174 [exp]	17.0	0.8263
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	17.9	0.8506
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	18.1	0.8518
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	21.9	0.8318
AT3G26590			MATE efflux family protein (.1...		Lus10006206 [exp]	27.5	0.7781
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	32.1	0.8407
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	38.9	0.8298
					Lus10005096 [exp]	40.0	0.8339

Compare expression of checked genes

Lus10010109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.