Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32720 125 / 3e-38 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G53560 118 / 3e-35 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT2G46650 111 / 1e-32 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT5G48810 110 / 4e-32 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT1G26340 108 / 2e-31 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT1G37130 71 / 3e-15 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 70 / 1e-14 GNR1, NIA1 nitrate reductase 1 (.1) AT1G60660 61 / 1e-12 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT5G09680 60 / 9e-12 RLF reduced lateral root formation (.1.2) AT3G61580 59 / 5e-11 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012615 [exp] 225 / 2e-77 AT2G32720 135 / 4e-42 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10005992 [exp] 144 / 3e-45 AT5G53560 144 / 2e-45 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10030219 [exp] 140 / 1e-43 AT5G53560 151 / 4e-48 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10008838 [exp] 127 / 1e-38 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 125 / 6e-38 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10043137 [exp] 106 / 2e-30 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10032612 [exp] 106 / 2e-30 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10011858 [exp] 103 / 2e-29 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10036973 [exp] 103 / 4e-29 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G024600 [exp] 118 / 4e-35 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.015G007600 [exp] 115 / 6e-34 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.001G314200 [exp] 112 / 5e-33 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.002G242500 [exp] 112 / 6e-33 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.017G054300 [exp] 110 / 4e-32 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.010G156900 [exp] 93 / 3e-25 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.014G019200 [exp] 79 / 2e-19 AT5G48810 115 / 8e-34 ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) Potri.002G088600 [exp] 64 / 1e-12 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.005G172400 [exp] 62 / 3e-12 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.001G263800 [exp] 58 / 5e-11 AT5G09680 258 / 1e-87 reduced lateral root formation (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10010111 pacid=23158918 polypeptide=Lus10010111 locus=Lus10010111.g ID=Lus10010111.BGIv1.0 annot-version=v1.0 ATGGCGTCAAACCCCAGAATTCACGAGTTCGATGATCTGCGGAAGCACAGTCAACGGGATGATTGCTGGATTGTTATTCACGGCAAGGTGTACAATGTGA CAGACTTCCTAAATGAACATCCAGGAGGAGTAGAGGTTCTTCTCTCAGCTACTGAGAAAGATGCAAGTGACGATTTCGAAGATGTAGGACACGGGAAGGC AGCGAGGGAGCTGATGAAGAAATACTACATAGGGGAGATTGATCCTAACACCTTACCCTCTGGGAGAAAGTACAATCCAACCCCTGTCTTCAATGGCAAG AAGCCAGAGAAGAACAACTTGTTGTTGATGAAGCTTATTCTCCCTCTTCTTATCTTCGCCATTGCGTATGCTACTCTCAAACACGACTAG
AA sequence Show only first row Show all	>Lus10010111 pacid=23158918 polypeptide=Lus10010111 locus=Lus10010111.g ID=Lus10010111.BGIv1.0 annot-version=v1.0 MASNPRIHEFDDLRKHSQRDDCWIVIHGKVYNVTDFLNEHPGGVEVLLSATEKDASDDFEDVGHGKAARELMKKYYIGEIDPNTLPSGRKYNPTPVFNGK KPEKNNLLLMKLILPLLIFAIAYATLKHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10010111 [exp]	0	1
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10005592 [exp]	1.0	0.9040
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10012615 [exp]	1.4	0.8866
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	2.4	0.8035
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10018565 [exp]	5.3	0.8123
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035207 [exp]	7.2	0.7817
AT5G16660			unknown protein		Lus10026866 [exp]	7.5	0.8514
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10023142 [exp]	7.7	0.7833
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	11.8	0.8044
AT5G60890	MYB	AtMYB34, MYB34,...	ALTERED TRYPTOPHAN REGULATION ...		Lus10015713 [exp]	12.0	0.7586
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	12.0	0.7912

Compare expression of checked genes

Lus10010111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.