Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61850 152 / 1e-43 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT2G46590 126 / 4e-33 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT4G24060 109 / 3e-27 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT4G00940 106 / 2e-26 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT1G64620 105 / 2e-25 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 102 / 4e-25 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G45610 100 / 1e-24 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G65590 101 / 2e-24 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 101 / 3e-24 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT1G51700 97 / 6e-24 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012619 [exp] 337 / 6e-115 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10017313 [exp] 106 / 5e-26 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10003207 [exp] 106 / 5e-26 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10003208 [exp] 106 / 2e-25 AT4G24060 167 / 3e-48 Dof-type zinc finger DNA-binding family protein (.1) Lus10035504 [exp] 100 / 3e-25 AT1G51700 134 / 3e-40 DOF zinc finger protein 1 (.1) Lus10042114 [exp] 98 / 4e-25 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10033218 [exp] 103 / 8e-25 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10029767 [exp] 101 / 9e-25 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1) Lus10027797 [exp] 100 / 1e-24 AT1G51700 125 / 2e-36 DOF zinc finger protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G174300 [exp] 146 / 1e-41 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.015G009300 [exp] 142 / 3e-40 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.014G100900 [exp] 141 / 8e-40 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.012G018700 [exp] 124 / 3e-33 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.003G144500 [exp] 120 / 1e-31 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G086400 [exp] 118 / 8e-31 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G058200 [exp] 101 / 3e-24 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 99 / 1e-23 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.003G034200 [exp] 98 / 1e-23 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1) Potri.007G038100 [exp] 98 / 4e-23 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10010113 pacid=23158879 polypeptide=Lus10010113 locus=Lus10010113.g ID=Lus10010113.BGIv1.0 annot-version=v1.0 ATGGAAGAGACGGTGACATCAGCCAGCAACGTCAATACAAACAACTACATGATCAACAACAACAGCAACAATAATAATAATAGCAACATGTCTGGTAATA TTCCAAAGGCGGGAGGAGAGACAGGAGGAGATGTTCATAACAAGAAAGCAGCAGTAAGGCCACAGGAACAAGTGAACTGCCCAAGATGCAACTCTACCAA CACCAAGTTCTGCTACTACAACAACTACAGCCTCACTCAGCCCAGATACTTCTGCAAATCTTGCCGGAGGTACTGGACTGCCGGTGGGTCACTCAGGAAT GTCCCTGTTGGTGGAGGTTCTAGAAAGAACAAGAGATCTTCTTCTTTACCCTCCCCCTCCTCCTCAATAACTAATACTTCTACTACTTCCTCATCATCTG GTACCAACAAGCTAACTACAATCCCAGATTTGAACCCTCCAAGCTTCTCCTCCCAAAACCCTAAGGCCTTCCAAGGTCAAGACCTTAACTTGGGCTTCCC ACCTATTCATCAAGACACTAGTACTGCTCCTCAAGCAGGTTTGGAGGTGCTGAGAAATAATGGGATGGCAGCTAACAATCCGACAAGGGGATTTAACTCA TTCATATCAAATCCAGCAATGGCATCTAGCGCGGATAATAATCGCCATCCAAACCCGGTACTCTACTCATCGAACATTTCATCATCGTCGTCAGCAGCAG GATTCCATATGCAAGAAGAATTCAAGCCATCAACTCTCAACTTCTCCATTGATCATCATCATCAACAACAGCAACACCATCATCATCATGGGATTGATGA ACAAGAGAGTGGAGGGGAGATGGATAATGTGGGAAGAATCTTGTTTCCATTTGGAGATCACCACCACCATCATCATCTCAAACAGCAGCAGCAACACCAG ATTCATGGGGGAAAGGGACAGCAAGAACATGGACATCATGTTGATCATAATAACACTAGTGGAGGAGGAGGAGGAGGGTATTGGAGTGGGATGTTAGGCG GATCGGGAGCTTGGTGA
AA sequence Show only first row Show all	>Lus10010113 pacid=23158879 polypeptide=Lus10010113 locus=Lus10010113.g ID=Lus10010113.BGIv1.0 annot-version=v1.0 MEETVTSASNVNTNNYMINNNSNNNNNSNMSGNIPKAGGETGGDVHNKKAAVRPQEQVNCPRCNSTNTKFCYYNNYSLTQPRYFCKSCRRYWTAGGSLRN VPVGGGSRKNKRSSSLPSPSSSITNTSTTSSSSGTNKLTTIPDLNPPSFSSQNPKAFQGQDLNLGFPPIHQDTSTAPQAGLEVLRNNGMAANNPTRGFNS FISNPAMASSADNNRHPNPVLYSSNISSSSSAAGFHMQEEFKPSTLNFSIDHHHQQQQHHHHHGIDEQESGGEMDNVGRILFPFGDHHHHHHLKQQQQHQ IHGGKGQQEHGHHVDHNNTSGGGGGGYWSGMLGGSGAW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Lus10010113 [exp]	0	1
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10024382 [exp]	6.0	0.8998
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10018947 [exp]	10.0	0.9007
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	16.6	0.9170
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	20.4	0.9076
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	26.0	0.9073
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	33.4	0.9063
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10013632 [exp]	36.1	0.8981
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	42.7	0.8975
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10014066 [exp]	51.8	0.8929
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10017486 [exp]	52.2	0.8886

Compare expression of checked genes

Lus10010113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.