Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10810 63 / 7e-13 unknown protein AT4G24030 54 / 6e-09 unknown protein AT4G24026 51 / 2e-08 unknown protein AT5G53030 47 / 5e-06 unknown protein AT4G27810 44 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012620 [exp] 108 / 4e-30 AT4G10810 62 / 2e-14 unknown protein Lus10007785 [exp] 49 / 3e-07 ND 56 / 4e-11 Lus10022380 [exp] 43 / 1e-05 AT4G10810 60 / 2e-13 unknown protein Lus10030238 [exp] 43 / 0.0001 AT4G00950 61 / 1e-10 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Lus10005972 [exp] 42 / 0.0002 AT4G00950 62 / 2e-11 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Lus10023038 [exp] 40 / 0.0002 AT4G10810 67 / 3e-16 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G173700 [exp] 74 / 6e-17 AT4G10810 69 / 8e-17 unknown protein Potri.002G172900 [exp] 72 / 8e-15 AT4G00950 113 / 5e-30 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Potri.014G100200 [exp] 68 / 4e-13 AT4G00950 87 / 7e-20 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Potri.014G013600 [exp] 62 / 4e-12 AT4G10810 56 / 1e-11 unknown protein Potri.002G116200 [exp] 59 / 4e-11 AT4G10810 53 / 3e-10 unknown protein Potri.014G007000 [exp] 53 / 8e-09 AT4G10810 43 / 1e-06 unknown protein Potri.015G011900 [exp] 52 / 8e-08 AT4G27810 97 / 3e-25 unknown protein Potri.001G087200 [exp] 48 / 2e-07 AT4G10810 60 / 2e-13 unknown protein Potri.003G143800 [exp] 46 / 1e-06 AT4G10810 60 / 2e-13 unknown protein Potri.012G016700 [exp] 45 / 1e-05 AT4G27810 87 / 1e-21 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10010114 pacid=23158877 polypeptide=Lus10010114 locus=Lus10010114.g ID=Lus10010114.BGIv1.0 annot-version=v1.0 ATGGGAAGTAAGAAGAAGATAGAGGAAGACACAGCACAACCACCACCACCACCACCAAGGCTGCAATTTTTCCCAATGAAGCAGTCTCCAGAGAGGTCAG GGATGCTTACTCCACCACTTCAATCTCCAGCGTCAGTGCCATTTACATGGGAAGAACAGCCTGGAAAGCCAAGATATTTCCTCTCCCCTTCACCTCCTCA ACTGCTAGACCTTCCACCAAGGCTTCTCATGGATTCTTACAAATTCCCCTCACCCACCACAGTATTAGAGGGTCCTTATGTTGGAGGGAGGTCAAAGTTC CAGTCTTTTTCATCATTCAGGATCAAGCAGCCGCAGGACTCCTTGAGGAGGACTGAAAGCCTTCATAGGAGAAGAAATGGAGGTTTCTTCACTTCTTGGA AAGTTATGTTCAAAACTAAAGATGGATTAAGCAGCAGCAGCAGTCATTGTTATGAAGAGGAAGAAGAGGAGAAAGGGTTGTCAGAAACAAAGATGAGCAG CAGATCAGGAAGCTTCACTGCTGCCACAAAGTCTCATCATTTATGGAAAGAAGAACTAGGTATGGCGTGCGGAAAATTGGATAGAGCGGCGAGCTGGGTA GGGGAGAACGTAGCCTCTGCTTTCTTCGCATCCCTTGAGCGTTGCTCCTGCATCAACCTCAGCACCTCCGATGATAACAAGAGCGACGCCCCAGACCTCC CCCTCGTCCTCCCCACCTCCTCCTTCTCCTCCGCCACCGACCCCGTCGCTCCTGCCTCCGCCGTCCCCAGCAGCTCCGATGCGAATATCAAGTGA
AA sequence Show only first row Show all	>Lus10010114 pacid=23158877 polypeptide=Lus10010114 locus=Lus10010114.g ID=Lus10010114.BGIv1.0 annot-version=v1.0 MGSKKKIEEDTAQPPPPPPRLQFFPMKQSPERSGMLTPPLQSPASVPFTWEEQPGKPRYFLSPSPPQLLDLPPRLLMDSYKFPSPTTVLEGPYVGGRSKF QSFSSFRIKQPQDSLRRTESLHRRRNGGFFTSWKVMFKTKDGLSSSSSHCYEEEEEEKGLSETKMSSRSGSFTAATKSHHLWKEELGMACGKLDRAASWV GENVASAFFASLERCSCINLSTSDDNKSDAPDLPLVLPTSSFSSATDPVAPASAVPSSSDANIK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10810			unknown protein		Lus10010114 [exp]	0	1
AT4G22320			unknown protein		Lus10032566 [exp]	5.7	0.8764
AT2G14660			unknown protein		Lus10033766 [exp]	7.1	0.8795
AT1G30320			Remorin family protein (.1)		Lus10023284 [exp]	8.1	0.9047
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10016671 [exp]	10.1	0.8577
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021619 [exp]	10.8	0.8738
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10001242 [exp]	11.0	0.8702
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014359 [exp]	12.6	0.9125
AT5G27690			Heavy metal transport/detoxifi...		Lus10015174 [exp]	13.5	0.8354
AT4G37810			unknown protein		Lus10019254 [exp]	19.8	0.8785
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10030452 [exp]	20.0	0.8826

Compare expression of checked genes

Lus10010114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.