Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012621 [exp] 261 / 7e-91 ND 38 / 0.002 Lus10003758 [exp] 224 / 1e-75 ND / Lus10010117 [exp] 186 / 1e-61 ND 39 / 4e-04 Lus10028048 [exp] 184 / 1e-60 ND / Lus10003757 [exp] 182 / 7e-60 ND / Lus10014738 [exp] 157 / 2e-50 ND / Lus10002731 [exp] 145 / 1e-45 ND / Lus10035753 [exp] 116 / 2e-33 ND / Lus10008314 [exp] 114 / 4e-33 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 40 / 0.0001 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010116 pacid=23158898 polypeptide=Lus10010116 locus=Lus10010116.g ID=Lus10010116.BGIv1.0 annot-version=v1.0 ATGTATTGCTGGTACAAACTGCATGCGATACCTGCAGCAGCAGCAGCAGCAGCAGTGATTATGCTTATCGGTATACTTTCCATCAGCGTCGTCGTCGAGG GCAAGTTCCCCGACACGACCATCCTCAGCGGTCCGAATTGCACCGGGAAATCGACCACGAAGAAGTACAATGACAATGTGATGCATCTCCTCGATACGTT TGTGAAGGACACAAAGATAAGCAGAAGGAATATTTACGGAGATCGACAGATGAACCATAGTCATCCGAATCGAAACCCGGGGTCGCCTTATGGTGAATCG GTTTGCTACCAAGACCTTGGAAGGCTAGACTGTTTCAATTGTCTGTTCAATGCTAAGGGCAAAATCGGCAATGGTTGCTTGCACCCGATTGCTGCTAGCA TCAAACTCCAGGACTGCTCCATTTGGTTCAATGCCCACCCTTAA
AA sequence Show only first row Show all	>Lus10010116 pacid=23158898 polypeptide=Lus10010116 locus=Lus10010116.g ID=Lus10010116.BGIv1.0 annot-version=v1.0 MYCWYKLHAIPAAAAAAAVIMLIGILSISVVVEGKFPDTTILSGPNCTGKSTTKKYNDNVMHLLDTFVKDTKISRRNIYGDRQMNHSHPNRNPGSPYGES VCYQDLGRLDCFNCLFNAKGKIGNGCLHPIAASIKLQDCSIWFNAHP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010116 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10031589 [exp]	1.0	0.8964
					Lus10003840 [exp]	9.1	0.8729
AT3G21120			F-box and associated interacti...		Lus10040800 [exp]	9.6	0.7782
					Lus10022573 [exp]	11.1	0.8729
					Lus10034050 [exp]	11.3	0.6143
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	12.8	0.8729
					Lus10006661 [exp]	14.3	0.8729
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10009378 [exp]	15.7	0.8729
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10038264 [exp]	16.9	0.8729
					Lus10012429 [exp]	18.1	0.8729

Compare expression of checked genes

Lus10010116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.