Plant FIBer expression Database

Lus10010117 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003757
[exp]
236 / 2e-81 ND /
Lus10028048
[exp]
231 / 2e-79 ND /
Lus10012621
[exp]
190 / 5e-63 ND 38 / 0.002
Lus10010116
[exp]
186 / 8e-62 ND 36 / 0.007
Lus10014738
[exp]
170 / 2e-55 ND /
Lus10003758
[exp]
170 / 3e-54 ND /
Lus10002731
[exp]
160 / 6e-52 ND /
Lus10008311
[exp]
109 / 2e-31 ND 35 / 0.008
Lus10008314
[exp]
104 / 2e-29 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G039966
[exp]
39 / 0.0005 AT3G22060 273 / 5e-93 Receptor-like protein kinase-related family protein (.1)
Potri.005G208400
[exp]
38 / 0.0006 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
Potri.008G171700
[exp]
38 / 0.001 AT1G04520 349 / 3e-121 plasmodesmata-located protein 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01657 Stress-antifung Salt stress response/antifungal
Representative CDS sequence
>Lus10010117 pacid=23158876 polypeptide=Lus10010117 locus=Lus10010117.g ID=Lus10010117.BGIv1.0 annot-version=v1.0
ATGTATTCACAGTGGAAACTATACGCAGGGGCAGCAATTATGCTACTGTGTATAGTTGTTGAGGGGAAACTCCCCGACACGACCATCATAAGAGGGCCTG
ATTGCACGGGGAAATCGCCGACGGGAGCGTACAATCACAACGTGAAGCAGCTCATCAACAGCTTTGTTAAGGACACCAAGATAAGCAGGAGGAACATCTT
CGGGGATCGGCAAATGAATCACAGCTACCCGAATCGAAACCCAGGGTCGCCTTTCGGAGTGTCCACTTGCTACCAGGATCTCGGAAGGAATGATTGTTGG
AACTGTCTCGTCTCTGCAAAGGATAGACTCCAGAAGGGTTGCTTGCACCCGATTGCTGCTACCATAAGACTCCAGGACTGCTCCATCACTTTTAACATTA
CTGTTGGAGTGCTTTGA
AA sequence
>Lus10010117 pacid=23158876 polypeptide=Lus10010117 locus=Lus10010117.g ID=Lus10010117.BGIv1.0 annot-version=v1.0
MYSQWKLYAGAAIMLLCIVVEGKLPDTTIIRGPDCTGKSPTGAYNHNVKQLINSFVKDTKISRRNIFGDRQMNHSYPNRNPGSPFGVSTCYQDLGRNDCW
NCLVSAKDRLQKGCLHPIAATIRLQDCSITFNITVGVL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010117
[exp]
0 1
Lus10002152
[exp]
1.4 1.0000
Lus10005187
[exp]
2.0 1.0000
AT4G25650 TIC55-IV, PTC52... TRANSLOCON AT THE INNER ENVELO... Lus10025408
[exp]
3.0 1.0000
Lus10039750
[exp]
3.5 0.9995
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Lus10040338
[exp]
3.5 1.0000
AT2G25010 Aminotransferase-like, plant m... Lus10008761
[exp]
3.9 1.0000
Lus10012774
[exp]
4.0 0.9642
AT1G13710 CYP78A5, KLUH KLUH, "cytochrome P450, family... Lus10015788
[exp]
4.2 0.9539
AT2G45550 CYP76C4 "cytochrome P450, family 76, s... Lus10027430
[exp]
5.3 0.9671
Lus10030974
[exp]
5.5 0.7951

Lus10010117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.