Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61750 313 / 3e-105 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 191 / 5e-58 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G25290 103 / 6e-25 Auxin-responsive family protein (.1.2) AT5G47530 96 / 3e-22 Auxin-responsive family protein (.1) AT4G12980 94 / 1e-21 Auxin-responsive family protein (.1) AT4G17280 94 / 2e-21 Auxin-responsive family protein (.1) AT3G59070 94 / 4e-21 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G35735 93 / 5e-21 Auxin-responsive family protein (.1) AT2G04850 84 / 6e-18 Auxin-responsive family protein (.1) AT5G54830 56 / 2e-08 DOMON domain-containing protein / dopamine beta-monooxygenase N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012625 [exp] 583 / 0 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10016080 [exp] 179 / 3e-53 AT3G07570 397 / 9e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001180 [exp] 173 / 4e-51 AT3G07570 377 / 5e-130 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10025877 [exp] 112 / 2e-28 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10038225 [exp] 104 / 2e-26 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10012350 [exp] 99 / 6e-23 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10012305 [exp] 96 / 9e-23 AT3G07570 165 / 8e-49 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001162 [exp] 96 / 3e-22 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 96 / 6e-22 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098700 [exp] 398 / 3e-138 AT3G61750 402 / 2e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.014G197500 [exp] 206 / 6e-64 AT3G07570 402 / 7e-140 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.006G015000 [exp] 105 / 2e-25 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 102 / 1e-24 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.019G095800 [exp] 101 / 4e-24 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 101 / 4e-24 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1) Potri.019G096300 [exp] 101 / 4e-24 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 100 / 1e-23 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.019G096600 [exp] 99 / 2e-23 AT5G47530 296 / 1e-97 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 98 / 9e-23 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0559 [flax] [poplar] CBD9-like PF03351 [flax] [poplar] DOMON DOMON domain CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10010120 pacid=23158916 polypeptide=Lus10010120 locus=Lus10010120.g ID=Lus10010120.BGIv1.0 annot-version=v1.0 ATGACATTCGTACTATCTGGGGTGTACACGAGCGGGTGGGTTGGGATGGGGTTCTCCAAGAATGGGATGATGGTTGGATCAAGTGCTGTGGTGGGTTGGG TGACCAAGAAAGGAATCCCTATGATCAAACAGTACTATTTGCAAGGATCTAAGCAGTCACAAGTTATTGCAGATTCAGGGGAACTTGACCTCAACCACAT CCCACCTGCTGTAGCTCTTCACCCTCCACAGATTTACTTGTCTTTTCAGGCTAGGTTCCAGACTCCCCTCCAAAGGCAACCCATTCTCCTTGCCTTCGGG ACCAAGTATCCCCATCATCATCGATTGTCTCACCACGACGATAAGACTACTATTCTGTTCGACTTCTCCGCAGGTCCAAGATCTGGTGTAGTGATAAATG CAGGGGAAATAAAGAGAAACCATGGGGTGTTGGCTACATTGGGATGGGGTGTTTTCTTACCAGTTGGAGCCATTGTTGCAAGATACCTTAGGCATAATGA ACCCTTGTGGTTTTATCTCCATGCTTTCATCCAATTTGTGGGGTTTCTCTTTGGACTTGCAGCTATAGTACTAGGTCAGCAACTCTATTACAAGACCAAT GCCAATGTCCCTGCACATAGAGGGATTGGAATCTTCGTTCTAACCCTAGCCATTCTTCAGATACTGGCATTTTTCCTGAGACCCAACAAGGATTCAAAGA TGAGGAAGTACTGGAATTGGTACCACAGTTGGAGTGGCAGGGCTGCTCTCTTCTTTGCTGCGGTGAATGTGGTACTGGGAATCCACGTGGGACATGCTGG AACGACGTGGAAGGTGATGTATGGGTTGATACTTGCTGCCATTCTGGCAGCGGTCATATCTCTGGAAGCACTCTACTGGCTGAGGAGGAGGAGATCATCG GATCAGAAGAACATTGATATAAATTATCCTCCTGCATCCAACTTCCAGATGAACTCCATGCAATGA
AA sequence Show only first row Show all	>Lus10010120 pacid=23158916 polypeptide=Lus10010120 locus=Lus10010120.g ID=Lus10010120.BGIv1.0 annot-version=v1.0 MTFVLSGVYTSGWVGMGFSKNGMMVGSSAVVGWVTKKGIPMIKQYYLQGSKQSQVIADSGELDLNHIPPAVALHPPQIYLSFQARFQTPLQRQPILLAFG TKYPHHHRLSHHDDKTTILFDFSAGPRSGVVINAGEIKRNHGVLATLGWGVFLPVGAIVARYLRHNEPLWFYLHAFIQFVGFLFGLAAIVLGQQLYYKTN ANVPAHRGIGIFVLTLAILQILAFFLRPNKDSKMRKYWNWYHSWSGRAALFFAAVNVVLGIHVGHAGTTWKVMYGLILAAILAAVISLEALYWLRRRRSS DQKNIDINYPPASNFQMNSMQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	0	1
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	1.0	0.9956
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10019325 [exp]	1.4	0.9934
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	2.4	0.9900
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10011500 [exp]	3.2	0.9852
AT2G04850			Auxin-responsive family protei...		Lus10001162 [exp]	4.9	0.9814
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10026487 [exp]	5.3	0.9853
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10041601 [exp]	5.5	0.9759
AT2G28315			Nucleotide/sugar transporter f...		Lus10041315 [exp]	7.3	0.9846
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	7.4	0.9783
AT3G23200			Uncharacterised protein family...		Lus10022188 [exp]	7.5	0.9731

Compare expression of checked genes

Lus10010120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.