Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61740 994 / 0 SDG14, ATX3 SET domain protein 14 (.1.2) AT5G53430 879 / 0 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 860 / 0 SDG16, ATX4 SET domain protein 16 (.1) AT2G31650 211 / 7e-56 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 205 / 4e-54 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G42400 120 / 3e-27 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT1G76710 99 / 3e-21 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT4G30860 94 / 1e-19 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT2G44150 91 / 2e-19 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT1G02580 93 / 5e-19 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012626 [exp] 1883 / 0 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10030262 [exp] 953 / 0 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10004012 [exp] 841 / 0 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10005007 [exp] 777 / 0 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10019026 [exp] 682 / 0 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10025508 [exp] 208 / 9e-55 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10026725 [exp] 206 / 3e-54 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025172 [exp] 130 / 4e-30 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 128 / 1e-29 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098400 [exp] 1201 / 0 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.002G170600 [exp] 1175 / 0 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.012G013900 [exp] 892 / 0 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 886 / 0 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.014G146300 [exp] 213 / 2e-56 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G232800 [exp] 209 / 3e-55 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.018G023000 [exp] 150 / 2e-36 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G001000 [exp] 137 / 1e-32 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G260100 [exp] 130 / 1e-30 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G195400 [exp] 104 / 4e-23 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain CL0049 [flax] [poplar] PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10010121 pacid=23158895 polypeptide=Lus10010121 locus=Lus10010121.g ID=Lus10010121.BGIv1.0 annot-version=v1.0 ATGAAAGCTGAGGTGCCCAAACTTACACGGAGCAAGGTGGAAGAAACTTACAGCGGATATGAAGACGAAGAAGAAGAGGAAGAAGAAGAAGAAGATTACG CATACTCTTTTGTCCCCAAGAGGCAAAAGATAGACGGTTCGAATGGAAGACCCAGCTTATACAGCAAGGTGGATGACTTCAGTAGTGCTACTGGTTCTGG GTATAGCGAGGGGTCCTACTTAGCAGGTCGTCAAATGGGTTCCAATTTGAACTCGTTGAAGAATCAGGCGCTGAAAAGGTCTCGGCCTCCTGCATTCAAA ACCTCACGAGGAAGAACGCACACGCTTCCTTCCAGGTTCAACGACTCTGTTGTTGATTTGATGAAGAATGTGAATGGTAGATTCTACGACACTAGTTCTA GCTGTGATAGTGATGATTTTTCTATGGAGCGTCTTGATGGCAACAGACATAGATTGGGTTTCTTAAATGAGAGCTTCAGGTTAGTGAACGATCATTATAC CCCGAATCCAGGAAGGAACAGAGGAATCGGTGCGATACAACTCAGCAACCACGACAGAAAGTACGAGCGGCAACATATGAATTTAGATGGTTCCATGTTA GGAGCTGTGGACGCTGGCCTCAGATTGGAACCTAGGGTTTCGCAGAAGTTCAAAACGGAAAAAATTGGTATTAGAAAGGACGTTTATAGGCCAGAGGACT TCGCTCTGGGAGATGTAGTCTGGGCCAGGAGCGGGAAGAGATACCCTTGGTGGCCAGCTGTTGTAATCGATCCCATACTACAAGCTCCTGAAGCTGTTCT TAGCTGTTGTGTTCCTGGCGCTTTATGTGTTATGTTTTATGGCTACTCCAAAAATGGAAGGCAAAGGGATTATGCATGGGTGAAACAAGGGATGATTTTC CCTTTTGCAGAATTTACTCACAGATTTCAGGGGCAGACTCAAATGTTCAAGTGCAAGATGAATGACTTTCAGATGGCATTAGAGGAGGCAATCTTAGCTG GAAGTGGTTTCCTTAATGCAGATAGTAGCACTACAAAAACAGGCTTCAAGGACGCTCACTTGAGAAAATTCCAGCATGCCAGTACTTCGAGTTACGATCA AGATATTTCATATCAGGATGCACGTCACAAGGAGATGAGATGCTGCGACGACTGCAATCTAGTGTTGCCATGCAAAGTTGTAAAGAAACTGAATGGCTCA GTGAATCAAAATGAGCTTCTGTGTGATCATTGTGCCAAGTTAAGGAAAGCAAACCAGTATTGTGGGATATGCAATAAAATATGGCGCCATTCAGATCGTG GAAATTGGGTCTGTTGTGATGGTTGTAATGTTTGGATCCATGCCCAGTGTGACAACATATCTAAAAAACATCTAAAGGATCTGGAAACCAATCAATACTA TTGCCCTGACTGCAGACTGAAGTTCAAAGTTCAGCCATTGGATTACAAGAGAAGGATGCTTCCGGTCAAGTCTACTATGAGCAGTGAAGAAGCAATGCCA CCTGAGAAAGTGACTGTTGTGTGCAATGGGATGGAGGGTACATATTTTCTGAAACATCATTCAATCGTATGCAGCTGTGGGTCTTGTGGGTCCCGGAAGC AAACTCCTAGTGAATGGGAAAAGCACACTGGATGCAGAGCTAAGAAATGGAAGTGTAGTGTCAAAGTGAAAGATACAATGTTGCCGCTGGAAAAATGGAT TGCTGAACATAGTGTGCATTTCTCAGATCCTCTGGAATTAGATAAGCAGAAGCTATGTCAAATTGCTGTCCACCAAGAGTGTTACGGAGCAAGGAATATT CAGGATTTCACTTCTTGGGCGTGTAGAGCATGTGAAACACCTGATATCGAGAGGGACTGTTGTCTCTGCCCTGTAAAAGGCAAGTACTTTGTGCTTTTAG ATTTCCTCTCTCTCCCCCCCCTTCAGCCTCTTCGTGGTGCTCTAAAACCAACCGACGTTGATAATCTGTGGGTTCATATAACATGTGCTTGGTTTCGTCC TCAAGTTGGTTTCTTGGATCATGAGAAAATGGAACCTGCGACTGGATTTTTCAGAATCCCTTCAGCTACCTTTCTAAAAAGCTGCGTTATTTGTAATCAG ACTCATGGTTCCTGTACCCAGTGTTGCAAGTGTGCTACACACTTCCACACAATGTGTGCCTATAGAGCTGGATATATCATGGAGGTACATTGTGTGGTAA AGAATGGGAAGGAAGAGACCAGGAAGCTGATATACTGTGCTGTTCACAGGAGCCCAAACCCAGATTCAGTTGTAGCTGTGCGTACTCCTGCAGGGATATT TGCTGCCAAAAGTTTGCTACAAAATCAGAATGACTTCTTTCGGGGCTCAAGGCTGGTATCATCTAGGAGAATTGAACTTCCCGAACCCTCAACCTCGAGG ACTGATGAGTTGGAACCTCTTTCCTCTGTGAGATGTTGTGCTTTTAGAACATCAAACAATAAGAAGTCATTTGTAGAGCCGGTATTTCACCACCCTGCGG GGCCACGACATCACTCTTTAGACGCAATAACCAGCTTTAACACCTCTGTGGACAAGGACGATTTTAGGATATTTACTTCATTTAAAGACAGACTTTACCA TTTACAGAAAACTGATAAGTATAGAATCTGTTTTGGCAAATCTGGCATACATGGATGGGGCCTCTTTGCCCGGAGAAACATTCATGAGGGCGAAATGGTT ACTGAATATCGTGGTGAGCTGGTTAGGCAGATTGTTGCCGACCTGCGAGAGGCTAAATACAAGTCACAAGGCAAAGATTGCTATCTGTTCAAGATCGGCG AGGACATGGTAATTGATGCCACAAATAAAGGGAACATGGCGCGCCTAATAAACCATTCGTGCATGCCAAATTGCTTCGCAAGGATAATGAGCGTAGGTGC AGCAGAGAACCGGGTGGTGTTGATTGCAAAGAGAGATGTTTCGAGTGGTGAAGAGCTAACATATGACTACTTGTTCGAGACTGACGAGTCAGAAGAGCAG AGAGTGCCTTGCCTTTGTGGAACTCGGGGATGCCGAAAGTTTATGAACTAA
AA sequence Show only first row Show all	>Lus10010121 pacid=23158895 polypeptide=Lus10010121 locus=Lus10010121.g ID=Lus10010121.BGIv1.0 annot-version=v1.0 MKAEVPKLTRSKVEETYSGYEDEEEEEEEEEDYAYSFVPKRQKIDGSNGRPSLYSKVDDFSSATGSGYSEGSYLAGRQMGSNLNSLKNQALKRSRPPAFK TSRGRTHTLPSRFNDSVVDLMKNVNGRFYDTSSSCDSDDFSMERLDGNRHRLGFLNESFRLVNDHYTPNPGRNRGIGAIQLSNHDRKYERQHMNLDGSML GAVDAGLRLEPRVSQKFKTEKIGIRKDVYRPEDFALGDVVWARSGKRYPWWPAVVIDPILQAPEAVLSCCVPGALCVMFYGYSKNGRQRDYAWVKQGMIF PFAEFTHRFQGQTQMFKCKMNDFQMALEEAILAGSGFLNADSSTTKTGFKDAHLRKFQHASTSSYDQDISYQDARHKEMRCCDDCNLVLPCKVVKKLNGS VNQNELLCDHCAKLRKANQYCGICNKIWRHSDRGNWVCCDGCNVWIHAQCDNISKKHLKDLETNQYYCPDCRLKFKVQPLDYKRRMLPVKSTMSSEEAMP PEKVTVVCNGMEGTYFLKHHSIVCSCGSCGSRKQTPSEWEKHTGCRAKKWKCSVKVKDTMLPLEKWIAEHSVHFSDPLELDKQKLCQIAVHQECYGARNI QDFTSWACRACETPDIERDCCLCPVKGKYFVLLDFLSLPPLQPLRGALKPTDVDNLWVHITCAWFRPQVGFLDHEKMEPATGFFRIPSATFLKSCVICNQ THGSCTQCCKCATHFHTMCAYRAGYIMEVHCVVKNGKEETRKLIYCAVHRSPNPDSVVAVRTPAGIFAAKSLLQNQNDFFRGSRLVSSRRIELPEPSTSR TDELEPLSSVRCCAFRTSNNKKSFVEPVFHHPAGPRHHSLDAITSFNTSVDKDDFRIFTSFKDRLYHLQKTDKYRICFGKSGIHGWGLFARRNIHEGEMV TEYRGELVRQIVADLREAKYKSQGKDCYLFKIGEDMVIDATNKGNMARLINHSCMPNCFARIMSVGAAENRVVLIAKRDVSSGEELTYDYLFETDESEEQ RVPCLCGTRGCRKFMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10010121 [exp]	0	1
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10013479 [exp]	1.7	0.8770
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	3.5	0.8890
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	8.7	0.8770
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	8.7	0.8761
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	10.4	0.8726
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	13.8	0.8741
AT2G45700			sterile alpha motif (SAM) doma...		Lus10038078 [exp]	16.4	0.8694
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	17.7	0.8698
AT2G17030			F-box family protein with a do...		Lus10012519 [exp]	18.3	0.7915
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10023583 [exp]	18.7	0.8724

Compare expression of checked genes

Lus10010121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.