Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36000 259 / 4e-84 unknown protein AT3G61730 238 / 2e-75 RMF reduced male fertility (.1) AT3G62500 133 / 2e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012627 [exp] 594 / 0 AT5G36000 337 / 5e-115 unknown protein Lus10004013 [exp] 303 / 2e-102 AT5G36000 271 / 3e-90 unknown protein Lus10030262 [exp] 305 / 5e-94 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10035747 [exp] 128 / 3e-35 AT5G36000 97 / 5e-24 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098300 [exp] 281 / 6e-93 AT5G36000 369 / 5e-128 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010122 pacid=23158888 polypeptide=Lus10010122 locus=Lus10010122.g ID=Lus10010122.BGIv1.0 annot-version=v1.0 ATGAGAACTGAGAACGCCGGGAAGCGATTGCGCAGAGAACGATCCATCTGCAGTTGCAAGTCTCCTCGTCTCTCTTATCGATCTTCTCCTCGCTCCTTCA ACTTTTACGAATTGGATGCTTGGACTGAGATCGCCAAATTCCTGGACGGAAAATCAATGGTGAAGCTCGCATTGACTTGCCAGTGGTTCCACGGCGTGAT TATGCAAGACAGCGTATGGAAGTATGCTTGCTTGAGCCTCTTTCAGGTTCCAGCTCCAGATCGTACGGAATTCAAATGGATTGAACTCTACGTTTCGGCA ATCAGTAATGCTCTCGCTACTCTATTAGAATCCTCTGCATCTATGGTTTCCATTCGTAAAATGCTTCTCTCTAACAAAAGAAAATCAATGGAGTTGCTAC TCTATTCAATTCTTCTGCATCTGTCGGTTGCTTGCTGTAGGCTCAATCATTATGTGTTACTAATGGCTACCGTTCTTTCAGGTGGAAACCATTCTTATAC ATTTCGTGAGAAGGAGAAACATCTTGACTGGATGAGGATCGGTGCCTTCTCCATAGACTCGCCATCAGTACTCCTTACCCAAAGACTCAACTTACCTTTG AAGATCATGAAACGTGAAACTCTGCAAAATATGCTGAAATCCACCGGTGCTTGTTTGCTAAATGGCCTCAGAAAGGGAATCTGGATAGCTGATTTACAGC TTGTCCGTTGCCCTGTTTGCGAACTCGATACTTGCGAGGGATATCCCATTTCTGAAGATGGAACTTGTGATGGTGCAGGAACAATGCAGACACTTGATGC GAGACATATTGAGCTGTTCCTAAGTGAAGGATACCAGAACGGAAGTTGGTTGTATGAGCAGATTGGATCCCATAAAGTTAAAGGCCAAGAGCATGCAGCG TCAGCGGCCATGATGGACCTCAAGCACATCACAGACCGTCAAACCGCTGAGGTGTTCAACCTGAAACTATGGGGCGGAAAACCCAAGGATTTCCTGCCAA AAGCTATGATCACTTACCATGCCACTGCAATTAGCACCCTCTTACAAGCCAATCAAGGATTGGTTTCAAAATTCTACGTGATGAGAGCTGGAACTGGAGG AGAAGTTGTTTCCATCAGAATCTCTCAGCAGCTCCTGTAA
AA sequence Show only first row Show all	>Lus10010122 pacid=23158888 polypeptide=Lus10010122 locus=Lus10010122.g ID=Lus10010122.BGIv1.0 annot-version=v1.0 MRTENAGKRLRRERSICSCKSPRLSYRSSPRSFNFYELDAWTEIAKFLDGKSMVKLALTCQWFHGVIMQDSVWKYACLSLFQVPAPDRTEFKWIELYVSA ISNALATLLESSASMVSIRKMLLSNKRKSMELLLYSILLHLSVACCRLNHYVLLMATVLSGGNHSYTFREKEKHLDWMRIGAFSIDSPSVLLTQRLNLPL KIMKRETLQNMLKSTGACLLNGLRKGIWIADLQLVRCPVCELDTCEGYPISEDGTCDGAGTMQTLDARHIELFLSEGYQNGSWLYEQIGSHKVKGQEHAA SAAMMDLKHITDRQTAEVFNLKLWGGKPKDFLPKAMITYHATAISTLLQANQGLVSKFYVMRAGTGGEVVSIRISQQLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36000			unknown protein		Lus10010122 [exp]	0	1
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018017 [exp]	1.0	0.9017
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10019230 [exp]	17.1	0.8099
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016810 [exp]	18.4	0.8856
AT5G56510		APUM12	pumilio 12 (.1)		Lus10024793 [exp]	19.5	0.8797
					Lus10015895 [exp]	29.5	0.8580
AT5G38760			Late embryogenesis abundant pr...		Lus10026292 [exp]	35.6	0.8435
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004687 [exp]	36.1	0.8529
AT2G27250		AtCLV3, CLV3	CLAVATA3 (.1.2.3)		Lus10013340 [exp]	37.9	0.8518
					Lus10027902 [exp]	41.7	0.8454
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	49.2	0.8415

Compare expression of checked genes

Lus10010122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.