Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46495 113 / 4e-30 RING/U-box superfamily protein (.1) AT5G53110 111 / 2e-29 RING/U-box superfamily protein (.1) AT2G46494 105 / 4e-27 RING/U-box superfamily protein (.1) AT2G25410 96 / 1e-23 RING/U-box superfamily protein (.1) AT5G36001 84 / 4e-20 RING/U-box superfamily protein (.1.2) AT1G28040 80 / 4e-18 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012628 [exp] 253 / 6e-84 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10014923 [exp] 85 / 3e-19 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10003401 [exp] 77 / 3e-17 AT5G53110 187 / 5e-57 RING/U-box superfamily protein (.1) Lus10019018 [exp] 71 / 2e-14 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10032382 [exp] 66 / 8e-13 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10023086 [exp] 66 / 1e-12 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1) Lus10025553 [exp] 59 / 2e-10 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10025491 [exp] 55 / 4e-09 AT5G53110 80 / 2e-16 RING/U-box superfamily protein (.1) Lus10025547 [exp] 44 / 2e-05 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G170300 [exp] 148 / 2e-43 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 141 / 7e-41 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.015G017800 [exp] 99 / 9e-25 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.012G011500 [exp] 97 / 6e-24 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.012G003000 [exp] 82 / 2e-18 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 82 / 2e-18 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 82 / 3e-18 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) Potri.015G018000 [exp] 77 / 9e-17 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 76 / 2e-16 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.003G139900 [exp] 76 / 2e-16 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010123 pacid=23158914 polypeptide=Lus10010123 locus=Lus10010123.g ID=Lus10010123.BGIv1.0 annot-version=v1.0 ATGGCAATCTCAGAAGCACACAACATTTGTCCTTGTTCTTCTGCTTCCTCCTCCACCTCATCATCACCCTTACAACCAAAAGAAGAAAACTGCCGAACTT CAAGATGCAGCGTCGCTGTACGGTTCCCTTTCCGCCTCACCGGCCGGCAGAACTGCGGTTACAGCCCCGAGTTCAACCTCGGGTGCAACAAGCAGAGCCT AACTACCCTCCAGCTCCCTTTCTCAGGTGACTTCCTTGTCGACAGCATCAACTATTTAACCCGACAGATATGGATCAACGACCCGGATGACTGCCTCCCG AAACGCCTCATCGCCTTGGACCTCTCCCGTTCACCTTTCTCCGCCGCCTTTGTCCGGAACTACACTTTCCTCAGCTGCCCTGCCCAGCTGGTGAGGTCCG ATTACTCCAAAATTGGTTGCCTCAGCAACTCCACCACCACCGTTTTGGCCACCTCTTCCCCCGCCTTCGTCCGACTCCTTGACCTCGACCTCGTCCTGCG TGGTTTCAGCGGCGGTGAAGGTCCCGGTTTCGTGGCCGGTTCAGCTTAG
AA sequence Show only first row Show all	>Lus10010123 pacid=23158914 polypeptide=Lus10010123 locus=Lus10010123.g ID=Lus10010123.BGIv1.0 annot-version=v1.0 MAISEAHNICPCSSASSSTSSSPLQPKEENCRTSRCSVAVRFPFRLTGRQNCGYSPEFNLGCNKQSLTTLQLPFSGDFLVDSINYLTRQIWINDPDDCLP KRLIALDLSRSPFSAAFVRNYTFLSCPAQLVRSDYSKIGCLSNSTTTVLATSSPAFVRLLDLDLVLRGFSGGEGPGFVAGSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53110			RING/U-box superfamily protein...		Lus10010123 [exp]	0	1
AT4G38380			MATE efflux family protein (.1...		Lus10026829 [exp]	6.9	0.8001
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10015705 [exp]	12.4	0.7422
AT5G42120			Concanavalin A-like lectin pro...		Lus10029769 [exp]	15.2	0.7733
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10034393 [exp]	17.1	0.7533
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	17.3	0.7691
					Lus10033722 [exp]	17.4	0.7484
AT5G42120			Concanavalin A-like lectin pro...		Lus10042795 [exp]	18.7	0.7328
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10006232 [exp]	19.9	0.7801
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	22.4	0.7696
AT5G14990			unknown protein		Lus10036529 [exp]	26.9	0.7546

Compare expression of checked genes

Lus10010123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.