Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01000 207 / 2e-62 Ubiquitin-like superfamily protein (.1) AT3G06455 91 / 4e-20 ubiquitin family protein (.1) AT5G06160 49 / 7e-06 ATO ATROPOS, splicing factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012629 [exp] 565 / 0 AT4G01000 327 / 2e-108 Ubiquitin-like superfamily protein (.1) Lus10019024 [exp] 50 / 2e-06 AT5G06160 730 / 0.0 ATROPOS, splicing factor-related (.1) Lus10000360 [exp] 49 / 5e-06 AT5G06160 743 / 0.0 ATROPOS, splicing factor-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098100 [exp] 243 / 1e-75 AT4G01000 135 / 5e-35 Ubiquitin-like superfamily protein (.1) Potri.002G170200 [exp] 233 / 1e-71 AT4G01000 125 / 2e-31 Ubiquitin-like superfamily protein (.1) Potri.015G017200 [exp] 50 / 3e-06 AT5G06160 720 / 0.0 ATROPOS, splicing factor-related (.1) Potri.012G012800 [exp] 49 / 4e-06 AT5G06160 718 / 0.0 ATROPOS, splicing factor-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010125 pacid=23158908 polypeptide=Lus10010125 locus=Lus10010125.g ID=Lus10010125.BGIv1.0 annot-version=v1.0 ATGGAAGACCACCGCGTGGCTGCGGATCGGACGGTGCTCCAGATCTTTGCAAGACTTCTTGACGGGACGACAGCGACTCTACGATTCCCTGCGCCACAAG CCTGTACTCACGAAATCAAGCGGCGAATCTTCGAGATCACCAGAATCCCCGTTCAATTGCAGAGGATTGTCAGCGGCGGCCGCCAGCTCGATGACGACTC CGTCGTTTCTACTCCGGAGTGCAACGTCCACCTCTTGCTCAGCCTCCTTGGAGGGAAGGGAGGTTTCGGCTCGCTTCTCCGTGGCGCAGCCAACAAAGCT GGACAGAAGAAGACGAACAATTTCGACGCCTGCAGAGATATGAGCGGCAGAAGGCTGCGCCATGTGAATGCTGAGAAGAGGTTGGAGGAGTGGAAAGAAG GAGAGGAAGAGAGGAAGTTAGAGAAGATTGCCCAAGATTTTCTCAAGAAGAAGGCGAAGAAAGGGGTAAAGGGTGCTGGCGATGGAGAAGCCGCAAAGTA TGTGGCCAGGTACAGGGAGGAATCCGCTAAGTGTGTAGCGGAAGTTGAGGAAGCCGTGAGGGAGGCTTTTAGTAACGGGAGCGGGAAAAGGAAGGGCAAG TTTCCTATGCATGCTGTGGAAGCCAAGAAGTCGAAGATTTGGCTGGGCAAGCAGAAATTGGATGAAAGCGATGTTGAAGATACAGAAGATGACAGCGATA GTGACAATGAGGATAAAGAAACTGAAAAGTCCGTTATTTTGAATGATGGGAGTAATTCAGACACAGTTTCTGACGGCAAGCAAACTGGAGAATGCTCTAC TGATGCTTCTTGTGAGAAGAGTGGTTCAGAGGAAGAAGTGAAAGAGGCTGCTGAGGAGCCAACCTGCGAGCCAAGTTCTGGTAGAGATGTTATCAACGAT GACATGCACATCGTTGCTGCACATCAGACTCCCCTGGAGGTGCAAGCGCCTTGGTCAGAAGATGCGAAGGCTTCTGGAATTGATAAAATAACTGAAACCC AAGAGAACTTAAGTTGCCAAAATGATGAAGCTCCTGCAAAGAGTCCAGCTACTAGTGTAACAAATGACCCAAAGTCAGATGCCGAGGAAGAAAAAGCAGC AGAGGTGGTTAATGATTCTGATTTGAAGAAGCCTCTGAACTTTGAAGACTTCAATTCACCTTCAGATCTAGAGGTAGTTGGTATGGAAAAGCTGAAGTGG GAATTGCAGGAGCGTGGGTTGAAATGCGGAGGAACTCTTAAAGAGAGAGCCGCAAGGCTTTTCCTCCTGAAATCAACAACTTTGGATAAGCTACCTAACA AGCTCGTCGCCAAGAAATGA
AA sequence Show only first row Show all	>Lus10010125 pacid=23158908 polypeptide=Lus10010125 locus=Lus10010125.g ID=Lus10010125.BGIv1.0 annot-version=v1.0 MEDHRVAADRTVLQIFARLLDGTTATLRFPAPQACTHEIKRRIFEITRIPVQLQRIVSGGRQLDDDSVVSTPECNVHLLLSLLGGKGGFGSLLRGAANKA GQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKEGEEERKLEKIAQDFLKKKAKKGVKGAGDGEAAKYVARYREESAKCVAEVEEAVREAFSNGSGKRKGK FPMHAVEAKKSKIWLGKQKLDESDVEDTEDDSDSDNEDKETEKSVILNDGSNSDTVSDGKQTGECSTDASCEKSGSEEEVKEAAEEPTCEPSSGRDVIND DMHIVAAHQTPLEVQAPWSEDAKASGIDKITETQENLSCQNDEAPAKSPATSVTNDPKSDAEEEKAAEVVNDSDLKKPLNFEDFNSPSDLEVVGMEKLKW ELQERGLKCGGTLKERAARLFLLKSTTLDKLPNKLVAKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	0	1
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	1.4	0.9071
AT5G20610			unknown protein		Lus10017162 [exp]	1.7	0.8616
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10017085 [exp]	3.2	0.8653
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	6.9	0.8401
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	7.5	0.8591
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	7.5	0.8500
AT4G24500			hydroxyproline-rich glycoprote...		Lus10020639 [exp]	8.1	0.8111
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	11.5	0.8402
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10032516 [exp]	11.8	0.8565
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	18.6	0.8223

Compare expression of checked genes

Lus10010125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.