Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61710 708 / 0 AtBECLIN1, ATATG6 BECLIN1, AUTOPHAGY 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012631 [exp] 659 / 0 AT3G61710 522 / 0.0 BECLIN1, AUTOPHAGY 6 (.1.2.3) Lus10012632 [exp] 313 / 7e-106 AT3G61710 228 / 2e-73 BECLIN1, AUTOPHAGY 6 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G170100 [exp] 833 / 0 AT3G61710 771 / 0.0 BECLIN1, AUTOPHAGY 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04111 [flax] [poplar] APG6 Apg6 BARA domain
Representative CDS sequence Show only first row Show all	>Lus10010126 pacid=23158865 polypeptide=Lus10010126 locus=Lus10010126.g ID=Lus10010126.BGIv1.0 annot-version=v1.0 ATGAGCGATAAGGGCGGGACTCTTCAAGTTCAGGTGGACCCCAACCTTCCACGATGGATGTGCCAGAACTGCCGTCACTCTCTTTGTATCGTCGGAGCTG ATTCCTTCGCTGACAAGTTCTTAAACGATTCCTCTTTCCGCTCCGTTCATGGAGCTAACAGTGTGCTGGGATCAACCCGTATGGATAATTCGTTTGTCGT ATTGTCAAAGCAAAAGCCCCAATCACAAGGAATCCCTCCTCGTCCACGAGGTGGAGGAGCTGGAGTCAGTGGCGTTCAGCCTGAGACAGGCCAGTCTGGT AAGGCAATGGATGAATCATTTGTTGTCGTGTATAAGTCTGAGCCTGCCTCTGATGGAGGTGCTGGAGGTCCTATGCCTTCCCTAGAAGGAGGATCCAATG GTCAGTTACATCCCAACAATGCCGGATTTCATTCCACCATCTCGGTTCTAAAACGAGCATTTGAGATTGCTACAACCCAGACACAGGTTGAGCAACCAAT GTGTCTTGAATGCATGAGAGTGTTGTCTGATAAACTAGATAAGGAGGTCGAAGATGTAAATAGGGACATTGAAGCATATGAAGCATGCCTCCAGCGTCTA GAAGGAGAGCCGCGGGATGTTCTCAGCGAGGCTGATTTTCTGAAGGAGAAACTAAAGATTGAGGAGGAGGAAAGAAAACTTGAAGCTACAATTTCGGAAA TCGAAAAGCAGAATGCAGAAGTTAATGATGAGCTGAAGGAGCTAGAGTTAAAATCTGTCCGCTTTAAAGATTTGGAGGAACGGTACTGGCAGGAGTTCAA TAATTTTCAGTTTCAGTTAATATCATATCAGGAAGAGAGAGATGCAATTCTGGCAAAGATTGAGGTTTCTCAGGCACACTTGGAGTTGTTGAAGCAAACC AATGTGCTGAGTGATGCTTTCCCCATTCATCATGACGGAGAGTTTGGAACTATAAACAATTTCCGGCTGGGAAGACTTCCTAAAATTCCGGTTGAATGGG ATGAGATCAATGCTGCATGGGGCCAAGCTTGTCTTCTCCTCCATACAATGTGTCAATACTTCAAGCCGAAGTTTCCATATCGCATAAAAATGATTCCTAT GGGGAGCTACCCACGCATTATGGATAGCAACAACAATTCATATGATCTGTTTGGTCCGGTGAATTTGTTTTGGAGCACTCGGTATGATAAAGCGATGACA TTGTTCCTAACATGCCTCAAGGATTTTTCCGAGTTTGCATATCTGAAGGATCAAGAAAACAACATTCCACCTGAGAAACGGTTCAAGCTTCCATATAAGA TTGAGAATGATAAAGTGGAAAGCTACTCAATAACTCAGAGCTTCAATAAGCAAGAGAACTGGACAAAAGCTCTAAAGTACACTTTGTGCAATTTGAAATG GGCTCTCTACTGGTTCATTGGTAACACGAACTTCCAACCTATGACCACAATGGTATCTCCACGAGTAGAAGTTGCAGGGGTAGGGTCTTTATATGCAAAG CATCGTGGGATAGAGTCGAAGCAGGAATCTCGAAACAAATGA
AA sequence Show only first row Show all	>Lus10010126 pacid=23158865 polypeptide=Lus10010126 locus=Lus10010126.g ID=Lus10010126.BGIv1.0 annot-version=v1.0 MSDKGGTLQVQVDPNLPRWMCQNCRHSLCIVGADSFADKFLNDSSFRSVHGANSVLGSTRMDNSFVVLSKQKPQSQGIPPRPRGGGAGVSGVQPETGQSG KAMDESFVVVYKSEPASDGGAGGPMPSLEGGSNGQLHPNNAGFHSTISVLKRAFEIATTQTQVEQPMCLECMRVLSDKLDKEVEDVNRDIEAYEACLQRL EGEPRDVLSEADFLKEKLKIEEEERKLEATISEIEKQNAEVNDELKELELKSVRFKDLEERYWQEFNNFQFQLISYQEERDAILAKIEVSQAHLELLKQT NVLSDAFPIHHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFKPKFPYRIKMIPMGSYPRIMDSNNNSYDLFGPVNLFWSTRYDKAMT LFLTCLKDFSEFAYLKDQENNIPPEKRFKLPYKIENDKVESYSITQSFNKQENWTKALKYTLCNLKWALYWFIGNTNFQPMTTMVSPRVEVAGVGSLYAK HRGIESKQESRNK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10010126 [exp]	0	1
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10036364 [exp]	1.7	0.9145
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10034017 [exp]	2.4	0.9104
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	5.5	0.9112
AT4G03020			transducin family protein / WD...		Lus10029621 [exp]	6.7	0.9014
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10012050 [exp]	8.9	0.9192
AT5G66930			unknown protein		Lus10019643 [exp]	9.5	0.9222
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10012803 [exp]	10.3	0.8801
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10032717 [exp]	10.5	0.9056
AT5G53220			unknown protein		Lus10001067 [exp]	11.1	0.9123
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10026356 [exp]	14.7	0.9061

Compare expression of checked genes

Lus10010126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.