Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08610 638 / 0 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63630 634 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 622 / 0 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT1G63250 501 / 1e-170 DEA(D/H)-box RNA helicase family protein (.1) AT2G07750 493 / 1e-166 DEA(D/H)-box RNA helicase family protein (.1) AT5G65900 220 / 3e-64 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 216 / 3e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G54910 186 / 3e-51 DEA(D/H)-box RNA helicase family protein (.1) AT5G14610 183 / 1e-50 DEAD box RNA helicase family protein (.1.2) AT3G01540 182 / 2e-50 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012633 [exp] 953 / 0 AT5G08610 719 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030265 [exp] 683 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004017 [exp] 682 / 0 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043479 [exp] 495 / 5e-170 AT1G63250 767 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10034109 [exp] 303 / 4e-100 AT1G63250 444 / 5e-152 DEA(D/H)-box RNA helicase family protein (.1) Lus10009616 [exp] 219 / 6e-64 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 217 / 3e-63 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 216 / 4e-63 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034110 [exp] 192 / 6e-56 AT2G07750 330 / 7e-106 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G169800 [exp] 679 / 0 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 671 / 0 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G124100 [exp] 493 / 5e-167 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G107300 [exp] 479 / 1e-161 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.009G045300 [exp] 221 / 4e-65 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 221 / 7e-65 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 197 / 5e-55 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 189 / 2e-54 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 181 / 3e-51 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G347100 [exp] 184 / 2e-50 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10010127 pacid=23158923 polypeptide=Lus10010127 locus=Lus10010127.g ID=Lus10010127.BGIv1.0 annot-version=v1.0 ATGGGTCGTAGAGGGAAGGGTGGTGCCGGAGGGAAAGACAAGGAAGACGGCCAAATGCAGAGATTCTCTGCCAAGAGAAAAGCCGAGAGCAACAATGGTG GCGGGTCTGCCCCGAAGAAGAATCGTGGTTCTTCTCCGTCGGGATTGGAAAACGAGGATCAGGCGAAATCAACTCCTTCTGCTCCTGGAAACTCGGATAA TTATCTCAGTCAAACTAGGTATGCTGAATCAAGAAAGGACGTTCTAGCTAAAGCCAAAACAGGCACTGGAAAGACTTGTGCATTTCTGCTTCCATCTATT GAAGTCATTGTGAAATCAGCTCCTGGTGAACGTGATAACAAACGATCTCCTATCGTTGTTCTTGTCATATGCCCCACAAGGGAGCTTGCTACACAAGCTG CAGCAGAAGCGAACAAACTACTAAAGTACCATCCCTCTCTTGGTGTTCAATATGTGATAGGCGGGGTGTTGGGCGGTACAAGCCTTAATCAGGAACAGAA AAGCCTGCAATCTAAACCCTGCCAAATCCTTATTGCTACACCTGGTAGACTTAATGACCATATTGAGAATACATCTGGATTCGCAACAAGAGTTAAGAGT GTAAAAGTCCTTGTTCTTGATGAAGCTGATTGTTTACTTGACATGGGATTCCGTAGAGACCTTGACAAAATAATAGCTGCTCTTCCGAAACAACGCCAAA CACTTCTGTTTTCAGCAACAGTCCCTGAACAGGTCCGTCAAATGTCTCATGTTGCTTTGAAGAGTGACCATGTGTTTGTTAATACCGTTGAAGAGGGATC TGAGCAGACACATGCACGGGTCAGACAAACTCATATGGTTGCTCCAATGGATAAGCACTTTCCTCTTGTGTATGCGCTCTTAAGAGATCACATTGCAGAT GATTCTGATTACAAGGTTCTTGTCTTTTGTACCACTGCCCGGTTGACAGGACTTGTTTCAGAGTATCTTGGTAAGTTAAAGCTAAATGTCCAAGTGATCC ATTCCAGGAAGTCTCAAAGTAACAGGACTCGTGTTTCTGATTTGTTCCGGAAGTCCAAGGGAATGATACTTGTAACTTCTGATGTATCAGCACGCGGTGT TGATTACCCGGATGTTACTCTTGTCATACAGTTGGGTTTGCCTGCCAGTAGAGAACAGTACATCCACAGGCTTGGCCGAACAGGGCGAAAGGGGAAAGAA GGACAAGGAATACTCTTGCTTGCGCCGTGGGAGCAATTCTTTCTATTTAGAGTGAAGGATTTGCCGATAACGGACGCTCAATCGCCACCGTTAGACCCAC AGACAGCCAAGAAGGTTGAAGTGGCGATGTCCCAAGTGGATAAGCAGCACAAAGAAGCAGCATATCAAGCATGGCTGGGGTATTACAGCTCGGACAAGGA GACTAGAAAGGACAAGAAGAAGCTGGTTGAGTATGCTAACGAGTTCAGTAGGATTATGGGGTTGAAGGAACCCCCTATCATTCCCAAGAGGATCCTTGCT AAGATGAGTCTCAACAATGTCGCTGGTTTGCGCTCTGGTTAG
AA sequence Show only first row Show all	>Lus10010127 pacid=23158923 polypeptide=Lus10010127 locus=Lus10010127.g ID=Lus10010127.BGIv1.0 annot-version=v1.0 MGRRGKGGAGGKDKEDGQMQRFSAKRKAESNNGGGSAPKKNRGSSPSGLENEDQAKSTPSAPGNSDNYLSQTRYAESRKDVLAKAKTGTGKTCAFLLPSI EVIVKSAPGERDNKRSPIVVLVICPTRELATQAAAEANKLLKYHPSLGVQYVIGGVLGGTSLNQEQKSLQSKPCQILIATPGRLNDHIENTSGFATRVKS VKVLVLDEADCLLDMGFRRDLDKIIAALPKQRQTLLFSATVPEQVRQMSHVALKSDHVFVNTVEEGSEQTHARVRQTHMVAPMDKHFPLVYALLRDHIAD DSDYKVLVFCTTARLTGLVSEYLGKLKLNVQVIHSRKSQSNRTRVSDLFRKSKGMILVTSDVSARGVDYPDVTLVIQLGLPASREQYIHRLGRTGRKGKE GQGILLLAPWEQFFLFRVKDLPITDAQSPPLDPQTAKKVEVAMSQVDKQHKEAAYQAWLGYYSSDKETRKDKKKLVEYANEFSRIMGLKEPPIIPKRILA KMSLNNVAGLRSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10010127 [exp]	0	1
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10017214 [exp]	1.7	0.9077
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10022991 [exp]	1.7	0.8861
AT5G27120			NOP56-like pre RNA processing ...		Lus10001716 [exp]	2.8	0.8992
AT5G15700			DNA/RNA polymerases superfamil...		Lus10005097 [exp]	4.2	0.8653
AT4G28510		ATPHB1	prohibitin 1 (.1)		Lus10019161 [exp]	6.5	0.8774
AT5G15550			Transducin/WD40 repeat-like su...		Lus10024727 [exp]	9.5	0.8800
AT1G15870			Mitochondrial glycoprotein fam...		Lus10026060 [exp]	11.9	0.8487
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	14.4	0.8733
AT1G77550			tubulin-tyrosine ligases;tubul...		Lus10027620 [exp]	14.4	0.8681
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	15.1	0.8685

Compare expression of checked genes

Lus10010127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.