Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27950 49 / 7e-07 AP2_ERF CRF4 cytokinin response factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018756 [exp] 67 / 9e-13 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10005149 [exp] 64 / 1e-12 AT4G27950 106 / 6e-28 cytokinin response factor 4 (.1) Lus10039324 [exp] 50 / 4e-07 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10027573 [exp] 50 / 4e-07 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167400 [exp] 76 / 2e-16 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.014G094500 [exp] 70 / 4e-14 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1) Potri.019G131300 [exp] 48 / 2e-06 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.012G032900 [exp] 47 / 6e-06 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.015G023200 [exp] 44 / 3e-05 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.001G094800 [exp] 43 / 0.0001 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010129 pacid=23158893 polypeptide=Lus10010129 locus=Lus10010129.g ID=Lus10010129.BGIv1.0 annot-version=v1.0 ATGAGCCGTTTCCCGGCGAGGGTCAAGCTCACGGAGCACCTAACCGTCACCCGCAAACTCGTCAAGCTCGAAAATCCACAGAGGAGCGCCACGAGAATCG TTCGTATCTCCGTCGCCGACGGAGACGCGACTGACTCCTCCGGCGACGAGAACGACGGCTACAAAACAGTTAAGAAGCATATTCATGAGATCCGTATAGT ACAACAACTAGACTTCGCCGGCGGTGACTCCTTCCTGTCGTCGGCGCCAGAGGAGGCGGCCACGGTTCAAAATAAAGGCCAGGACGCTCCGCCGGTTCAG AGACTTGATCCGCCGTCAGAGGTAGAAGCTGCAACGGTTCTCGGCAAGGAATCTTACAGCCTCCGGTCGCCGTTGTCTGCTTTGAGATTCGGACGAGATA ACAAGACGACTGAGATTCGAGGAGGCGAAGGGTGTATAGAGTGGGAAGAATACTGGGGACAGCTTGGGAGGCGGACGGAGGAAGATTCATCGGCGGCGGT TGATGAATTTTGGTGGGATGAGGATTTTCTTGTCGATTTGGAGAAGAGGGGTCGATTTGTCAAGGAGGATTACTGGTGGGGTATGATGGAAATGGTAGAT GAATCTCTGGTAGATTTGGGAGAAGAGATTGGGTCTTGTAATTGGGACGTTGATTCTTACTTTGGTGTTTAA
AA sequence Show only first row Show all	>Lus10010129 pacid=23158893 polypeptide=Lus10010129 locus=Lus10010129.g ID=Lus10010129.BGIv1.0 annot-version=v1.0 MSRFPARVKLTEHLTVTRKLVKLENPQRSATRIVRISVADGDATDSSGDENDGYKTVKKHIHEIRIVQQLDFAGGDSFLSSAPEEAATVQNKGQDAPPVQ RLDPPSEVEAATVLGKESYSLRSPLSALRFGRDNKTTEIRGGEGCIEWEEYWGQLGRRTEEDSSAAVDEFWWDEDFLVDLEKRGRFVKEDYWWGMMEMVD ESLVDLGEEIGSCNWDVDSYFGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10010129 [exp]	0	1
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	1.0	0.9162
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	2.4	0.8746
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10023743 [exp]	5.5	0.8520
AT1G32730			unknown protein		Lus10040132 [exp]	6.0	0.8595
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	7.2	0.8385
AT5G56520			unknown protein		Lus10005700 [exp]	8.5	0.8252
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	8.8	0.8745
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10026767 [exp]	8.9	0.8306
					Lus10012330 [exp]	8.9	0.8418
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	9.2	0.8277

Compare expression of checked genes

Lus10010129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.