Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46300 123 / 1e-34 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G01453 78 / 3e-17 unknown protein AT4G01110 74 / 8e-16 unknown protein AT1G17620 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G54540 49 / 6e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012638 [exp] 166 / 5e-53 AT2G46300 75 / 1e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 52 / 8e-08 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10037638 [exp] 50 / 2e-07 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 50 / 3e-07 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10005216 [exp] 44 / 2e-05 AT2G27260 152 / 2e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167300 [exp] 135 / 2e-39 AT2G46300 177 / 5e-55 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G094400 [exp] 135 / 4e-39 AT2G46300 174 / 8e-54 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 64 / 3e-12 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 54 / 2e-08 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G228600 [exp] 49 / 9e-07 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein Potri.018G052500 [exp] 47 / 3e-06 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.012G145500 [exp] 46 / 5e-06 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10010130 pacid=23158850 polypeptide=Lus10010130 locus=Lus10010130.g ID=Lus10010130.BGIv1.0 annot-version=v1.0 ATGGCTGACGTAGGCGGCCACCAGGTTCCCCGGCCACCAGCGTTCCGACCAACAAAAAAAGGAGCAAGCTGTTGCCGGATATGCTGCTGCGCTACCCTCC TCCTCACGTTCCTAATCCTCCTCCTCCTCGCCATTGCCTGCGGCCTCTTCTACCTCTACCACCCGAAAGTCCCATCCTTCAACATCAAATCTTTCAAAGC CTCCACTTTAACCCTAACCCCGAAACCGGAGGGCACCTACTTCTCCGCCGCGGTTTCCGCCGCCGTCCAGATCACCAACCCTAACGAGAAGCTGACGTAC CATTACGGGGAAACCCACGTGGGGATCACGCTCGGGGAGGATAAGGACACGGACATGGGGTCCACCACGCTGCCGCCTTTCGAGCAGGAGGGGAAGCAGA CAACGTCGTTGAAAGTGGAGACGAGCGTCAAGGAGGAGCTGTTGGATAAGGAGGAGGAGGAGAGGCTGCCGAGGCAGTATAAGGATAAGAGTCTGGTGGT TAATTTGGATATTAAGAGTGCAATTGGGGTGGAATTCGTTGGGGTGAAGCTCGGGATGTTGTCTGTTGATGTTACGTGTGATGGCATGACGCTTAAGGAG ATTGAGAGTGGTCGTAGTCCTGTTTGTAGCATCCAGGCGCTTCACAAATTGTAA
AA sequence Show only first row Show all	>Lus10010130 pacid=23158850 polypeptide=Lus10010130 locus=Lus10010130.g ID=Lus10010130.BGIv1.0 annot-version=v1.0 MADVGGHQVPRPPAFRPTKKGASCCRICCCATLLLTFLILLLLAIACGLFYLYHPKVPSFNIKSFKASTLTLTPKPEGTYFSAAVSAAVQITNPNEKLTY HYGETHVGITLGEDKDTDMGSTTLPPFEQEGKQTTSLKVETSVKEELLDKEEEERLPRQYKDKSLVVNLDIKSAIGVEFVGVKLGMLSVDVTCDGMTLKE IESGRSPVCSIQALHKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46300			Late embryogenesis abundant (L...		Lus10010130 [exp]	0	1
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10000168 [exp]	1.7	0.8825
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002395 [exp]	2.4	0.8825
AT3G43660			Vacuolar iron transporter (VIT...		Lus10031543 [exp]	3.5	0.7804
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10005834 [exp]	9.0	0.8260
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10033233 [exp]	17.4	0.6987
					Lus10025316 [exp]	18.5	0.6987
AT3G25820		ATTPS-CIN	"terpene synthase-like sequenc...		Lus10000476 [exp]	19.1	0.6702
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10030510 [exp]	19.5	0.6987
AT5G39200			unknown protein		Lus10030710 [exp]	20.4	0.6987
AT1G17930			Aminotransferase-like, plant m...		Lus10021566 [exp]	21.4	0.6987

Compare expression of checked genes

Lus10010130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.