Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61610 517 / 0 Galactose mutarotase-like superfamily protein (.1) AT4G23730 427 / 7e-152 Galactose mutarotase-like superfamily protein (.1) AT5G57330 420 / 7e-149 Galactose mutarotase-like superfamily protein (.1) AT5G14500 370 / 5e-129 aldose 1-epimerase family protein (.1) AT3G01590 367 / 6e-128 Galactose mutarotase-like superfamily protein (.1.2) AT4G25900 317 / 6e-108 Galactose mutarotase-like superfamily protein (.1) AT5G66530 129 / 4e-35 Galactose mutarotase-like superfamily protein (.1.2) AT1G55370 45 / 5e-05 NDF5 NDH-dependent cyclic electron flow 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012640 [exp] 623 / 0 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10003035 [exp] 512 / 0 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10005147 [exp] 512 / 0 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10028739 [exp] 478 / 9e-172 AT4G23730 474 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 478 / 1e-171 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10020015 [exp] 429 / 3e-152 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 422 / 2e-149 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 414 / 5e-146 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 408 / 6e-144 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G167200 [exp] 539 / 0 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G095300 [exp] 473 / 7e-170 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 443 / 1e-157 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 441 / 3e-157 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 416 / 5e-147 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 415 / 1e-146 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 376 / 2e-131 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.007G023200 [exp] 143 / 1e-40 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 56 / 1e-08 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10010131 pacid=23158894 polypeptide=Lus10010131 locus=Lus10010131.g ID=Lus10010131.BGIv1.0 annot-version=v1.0 ATGGGACATTCTGCAGCAGTTTGGGATTGCAGACCAGCCATAGAAATCACCAAGGACTGGAATGGGATCGACCAAGTAATGCTCCGTAGCCCACATGGCG CTTCTGCTACGGTGAGCTTACATGGGGCACAAGTTGTTTCATGGAGGAACGAACAAGGGGAAGAGCTACTCTTCACAAGCAGCAAGGCGATATTCAAGCA TCCAAAGGCAATGAGGGGAGGTATCCCAATCTGCTTCCCGCAGTTTGGCAACTGTGGGTCGTTAGAACAACACGGCTTTGCTCGGAACAAAGTTTGGACG ATTGATCAAAGTCCTCCTCCTTTGCACCCAAATGATTCTCATGGCAAATCCTTCGTTGACCTCCTCCTTAAACCATCCGAGGAAGACCTCAAATGCTGGC CACATAGCTTCGAATTCAGGCTGAGGGTGGCAATGTCGAGAAATGGGGAGTTGATGCTGACATCCAGAATTCGTAATGTGAACGGGAAACCATTCAGTTT CTCGTTTGGATATCACACCCATCTTTCGGTTTCCGACATCAGTGAAGTAAGAGTAGAGGGACTCGAAACTCTTGATTACTTGGACAACCTGTACCAGAGA AAACGATACACGGAGCAAGGAGATTCCATAACCTTTGAAACCGAGCTGGATCGTGCTTATCTCGGGGCGCCTAATGTGGTTGCTGTGCTTGACCATGAGC GGAAGAGAACGTTTATTGTGAGAAAGGAGGGGCTTCCAGACATTGCGGTGTGGAATCCGTGGGAGAAGAAGTCAAAGGCAATGGCTGATTTTGGGGACGA AGAGTACAAACAGATGTTATGCGTAGATGGTGCTGCAATTGAGAAGCCAATCACACTGAAACCAGGGGAGGAGTGGACTGGCCGGCTCGAGCTCTCAGTT ATGCCTTCCAGTTTTTGCGGCGACCACTTTTAG
AA sequence Show only first row Show all	>Lus10010131 pacid=23158894 polypeptide=Lus10010131 locus=Lus10010131.g ID=Lus10010131.BGIv1.0 annot-version=v1.0 MGHSAAVWDCRPAIEITKDWNGIDQVMLRSPHGASATVSLHGAQVVSWRNEQGEELLFTSSKAIFKHPKAMRGGIPICFPQFGNCGSLEQHGFARNKVWT IDQSPPPLHPNDSHGKSFVDLLLKPSEEDLKCWPHSFEFRLRVAMSRNGELMLTSRIRNVNGKPFSFSFGYHTHLSVSDISEVRVEGLETLDYLDNLYQR KRYTEQGDSITFETELDRAYLGAPNVVAVLDHERKRTFIVRKEGLPDIAVWNPWEKKSKAMADFGDEEYKQMLCVDGAAIEKPITLKPGEEWTGRLELSV MPSSFCGDHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61610			Galactose mutarotase-like supe...		Lus10010131 [exp]	0	1
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	4.2	0.8315
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	6.6	0.8228
AT3G61610			Galactose mutarotase-like supe...		Lus10012640 [exp]	7.3	0.8281
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	7.9	0.8298
AT2G35470			unknown protein		Lus10035375 [exp]	8.5	0.7574
AT3G27090			DCD (Development and Cell Deat...		Lus10041557 [exp]	10.1	0.7697
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10016929 [exp]	11.7	0.8004
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	12.0	0.8145
					Lus10013458 [exp]	12.8	0.7361
AT3G05610			Plant invertase/pectin methyle...		Lus10006940 [exp]	13.0	0.7797

Compare expression of checked genes

Lus10010131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.