Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01150 190 / 1e-62 unknown protein AT4G38100 99 / 4e-26 unknown protein AT2G46820 74 / 8e-17 PSI-P, TMP14, PTAC8, PSAP THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) AT1G52220 69 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012645 [exp] 234 / 1e-79 AT4G01150 212 / 3e-71 unknown protein Lus10003031 [exp] 151 / 2e-47 AT4G01150 153 / 3e-48 unknown protein Lus10012739 [exp] 107 / 2e-29 AT4G38100 135 / 3e-40 unknown protein Lus10002647 [exp] 90 / 2e-22 AT4G38100 130 / 5e-38 unknown protein Lus10030191 [exp] 82 / 7e-20 AT2G46820 169 / 4e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Lus10002673 [exp] 80 / 5e-19 AT2G46820 170 / 2e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G093900 [exp] 190 / 2e-62 AT4G01150 181 / 3e-59 unknown protein Potri.002G166800 [exp] 189 / 2e-62 AT4G01150 188 / 6e-62 unknown protein Potri.005G147801 [exp] 103 / 4e-28 AT4G38100 107 / 1e-29 unknown protein Potri.014G106400 [exp] 82 / 6e-20 AT2G46820 154 / 2e-48 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Potri.002G180400 [exp] 74 / 6e-17 AT2G46820 137 / 1e-41 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Potri.001G184700 [exp] 72 / 3e-16 AT1G52220 160 / 3e-51 unknown protein Potri.003G052200 [exp] 47 / 5e-07 AT1G52220 88 / 2e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010132 pacid=23158889 polypeptide=Lus10010132 locus=Lus10010132.g ID=Lus10010132.BGIv1.0 annot-version=v1.0 ATGGCAGCAACGATGTACGCGGCGTCAGCTTCTTCCGCTTCCCTTCTTCTCCCCGGCGTCTCCGCCGTAAGAACCTCCTCGCGCTGCTCTTCCATGCCTT TGCTTCCACCTCGCTCCTCTTTCTCCTCCTCTCGTTCCTCCCTTGCTTCCGTCAAACCGCTCTCAGAATCTTCAAGGGTTTCTCTGTTCCAGACAAGAGC TTCTTCAGAGGACACTTCCACTTCTGCCGATGGTAATGAAATATTTACCGATCTGAAGGAAAAGTGGGATGCACTTGAGAACAAGTCCACTGTGCTTCTC TATGGAGGTGGAGCAATAGTTGCTGTTTGGCTATCATCCACTGTTGTTGGTGCCATCAACTCTGTGCCATTGCTCCCAAAGATCATGGAGTTGGTTGGCC TTGGCTACACTGGCTGGTTTGTGTACAGATACCTTCTGTTCAAGCAAAGCAGGAAAGAACTTGCTACGGATATTGAGGCATTGAAGAAGAAGATTGCCGG GTCGGAATAG
AA sequence Show only first row Show all	>Lus10010132 pacid=23158889 polypeptide=Lus10010132 locus=Lus10010132.g ID=Lus10010132.BGIv1.0 annot-version=v1.0 MAATMYAASASSASLLLPGVSAVRTSSRCSSMPLLPPRSSFSSSRSSLASVKPLSESSRVSLFQTRASSEDTSTSADGNEIFTDLKEKWDALENKSTVLL YGGGAIVAVWLSSTVVGAINSVPLLPKIMELVGLGYTGWFVYRYLLFKQSRKELATDIEALKKKIAGSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01150			unknown protein		Lus10010132 [exp]	0	1
AT4G01150			unknown protein		Lus10012645 [exp]	1.0	0.9853
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10016502 [exp]	3.0	0.9585
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10033434 [exp]	3.5	0.9567
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10026241 [exp]	4.5	0.9597
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10016570 [exp]	4.9	0.9533
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10006710 [exp]	5.9	0.9567
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10042784 [exp]	6.7	0.9496
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10030969 [exp]	7.6	0.9318
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10028451 [exp]	9.4	0.9505
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10029823 [exp]	9.8	0.9442

Compare expression of checked genes

Lus10010132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.