Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46240 157 / 6e-39 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) AT1G12060 66 / 8e-12 ATBAG5 BCL-2-associated athanogene 5 (.1) AT3G29310 52 / 2e-06 calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012648 [exp] 1509 / 0 AT2G46240 157 / 1e-38 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10038064 [exp] 62 / 1e-09 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1) Lus10026469 [exp] 60 / 7e-09 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1) Lus10010486 [exp] 54 / 2e-07 AT1G12060 201 / 6e-65 BCL-2-associated athanogene 5 (.1) Lus10003798 [exp] 50 / 1e-05 AT1G12050 667 / 0.0 fumarylacetoacetase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G166300 [exp] 285 / 5e-80 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Potri.003G167500 [exp] 73 / 5e-13 AT1G12060 88 / 1e-19 BCL-2-associated athanogene 5 (.1) Potri.017G091100 [exp] 72 / 1e-12 AT3G29310 141 / 2e-36 calmodulin-binding protein-related (.1) Potri.016G014900 [exp] 63 / 1e-10 AT1G12060 159 / 6e-49 BCL-2-associated athanogene 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10010133 pacid=23158881 polypeptide=Lus10010133 locus=Lus10010133.g ID=Lus10010133.BGIv1.0 annot-version=v1.0 ATGTCGCTGTCAGCCGTTAGGAAGCGCGCGAAAGATCTCGAAGAGACGAGAATCTTGTTGGGTGTGCAGCGTCATTTTTCCTATACTGTATCTGAAACCA AGGGTTTCTGGGAGCAAGAAACCGTTGTAGAAATGTACCCTGCCTGCAGACACATGGATCTACACCACCCAACCGGTGGCTATATTCCAACTTTCCTGGC TCATCCAGGAGTGGATTCGTCAAAGCAGTCAAAAGCTTGCAAGCCTTGGCCATCATCTCCAAACAATTATGGTGGCTTCCCCGGTTCTGGTTACGGCTGT AACGGATATGGTGACTATCCTGTTCACCATGGTTCTTATTTTCCTTACCCATATCCTGCTCCTTCCCAAATTTTCTGCTGTGGACATCAACCATGTCCCA GTCCGTTTTATGCACCATATTACCCCTCCCCTCCCTACTATGGAATGGAGCTTAATCCCAATGGTCTGAACAATGATGTCAGGCATTGTTGTGGTTGTCC AAATCACACTCATAGCGAGAGAAGTCCCCATGCGGTGAAGGTAGAAGAACTTGAGCCTGACACTAAAGGGAAGCAAGTCGATTCATTTCTCCCGTTGCAG TTAAAGGGCAATAGATACCCTATTGTGTGGTTCCCAGGCGAGTGTATGAATAACAGGAACGAGGTCCAACAAGCTGATCAAAGTAGGGGTGGGATTGAAG CATCAAGAGATTCAGATGTCCATGAGCAGAATAAATTGTCTAAGCGACAGCCAAACGGGTGGTTTCCTCTTGACATGAATCATCTTGCTTCTTTATTTGG AGATGGTGAAAAGAGGAGTCTAAGTCACCGTGACGGAGACAAGGAGTTCCAGGTTCCTTTTGTGTGGATGCCTTCCCGTGAAGACCAGGAACATTCATAC AAGGGAACCGATGAAAAGTCCATTGATCCTCTTCACCTTGTTGAAAAGACCCATCCTTTATTCAAAATCTTTCAACCAGAACACTTGGGAGTTAAAAACA ACGCAGACAAGCATCCAGAATTGAAAGAAGATCCTAGCAGGAGCCATGGTGGTTCTGGGGAGAAGGAGAAGCATGAGAAGACCATCCCTGTCACGGAACT AAAACCATGTAAAGATTATGAGAACTTTGAAGACAAGGTGGCATGCAACAGAGTGGGCTCTTCAGCAAGAGCAAAAGATGATGTGAAGAGCAAGATCACT GATGCGAAAAGACAGTCGTCCTCCCCATCCAAAACAGCAAAATTATCGCCCGTGTGTCTGAGGGTTGATCCTCTCCCTAAGAAAAAGAATGGTAGCTCTC GATCTCCTAGTCCGCTGGGTTCTAAAGGGAAGACACTGGAGACATCTCAGGACTCATGCAAGACCACTGCTGTAACTGATACAATAGTCAAGGACCACGA GAATTCGCTTGATGTGGGTAGTACACCAACTAAGGAAGAGAAAGACGAAACAAATGCCGAATATAACATGGACACATTACTTCAACCTGCTTCCGTAAGC GAGACGGGAGAATTGAGACGTCAAGGATGCTCGAGAGATGAGTCAAGAGTGGTGACAAAAGAACCGACTGATTCAGTTGTGTTAGCCAATGGAGGACAGA CGACAGGAGTGAAGAGATTATCGAAAGAAGAAGCAGCTAAGCTTATCCAGTCTGTTTATCGAGGGTATAATGTAAGGAAATGGGAGCCATTGAAGAAGCT GAAGCAAATTGCTGGAGTTAGGGAGCAACTGACTGGCGTCAGGAATGGTATTCGTGCTCTGGAGACCTCAACTGAATGTGACGAAAAGCAGAAGGTTGCC AGAGGAGAAATGATAATGAATCTCTTGCTTAAACTGGACTCTATTCAGGGTTTGCACCCTAATTTCAGGGACATAAGAAAATCTCTGGCAAAGGAGCTTG TGACCTTGCAGGAGCATCTCGATTCTCTTGAAATCAAGAAGCAAGAGGTGTCCAATCCTTCTGGAGGCAATTACGTAGGAAACCATGCAAGTGAAAATTC GGGGGAGAACACATGTATCAGCCCGAAAGATGATGGCTGTGACGCATCTACACCTAGCTCTGTCACGAAAGAAGCATTAGCATCTGAAGCTGTTGGATCA TCTGCAGGAAATGAGCCTGAGTTAATGTTGTCTGACGGAGACTCACCATCCAAGGTGGATGAAAGAACGGATGATTCTGTTCTTATGAATATTGGAGTGA AGGAAGATGTGGGAGCAGTTGTACCTCAGGTCGTAGGTTCTGGCCCAGAAGGTACTGGTGTAGCAATGCAGATCAATGACGTGCTCAAAGGCTCGTCCCC GGATGTATTGAGCTTTGAGGCTTACGTTCCTGCGGGAGTGGGAGTGACTGGAGAAGAGAAATGTGTAAATTCTGAGAAGCAATCGAATGAGGGCTTTGGG GATGAAGTTCCAGAGAAGAAGGTAAACGCTGATGTTCCTGCAGGAGAAGCTATAGAAGTTGAGGGAGTTGAAGAACTCTGTGATTTCCAGGATGTAACCC AGGAGAGACATGCTAGTGGTTCAGTAGTAATAAAGGGTGCAGTAGCAATGCAAAAGGAGGCTTTAACGATGGAGAACGAAGTTGCAGAAAGTGGAGCTGC AGCACCAAGTGTTGGAGTAAATGGTGGTGGTATAGAGGGAGTCCCGAATAAAACTGAAACTTCATTACACAAGGACCAGCCATCTCAATCTGAAGCTGCA TTTTATAGTCTGATCCATGAAGGAGATAAACAAGATATTCATCCACAGCGAGAAGAGCATGAGAAGTCTAATAAAGGAAAAGAGCAAGCTGGAGAATTGG CTGATGGAATAACTGAAGCGGATCCGGTCTCTTCTTCTCAAGCGACAAAAGAAATATTGCTACCAGAGAAGGCGAGTCAGTTAGAGGAAGACATAGAGAC AACAGAGATGGCTGAGCTGGACCTGGACATAGAGACTGACGGTGATGAAAAGAGTGATGATGTTCAGAAGCCGGCATCACTGGGAAAGGAAGATGAGAAT GTTGTGGCAGAGAAGAAGAAGGGATTTGAGGAAGAAAATGCGAGGAGGATGAAGGAGTTGATGGAGAAGCTGGTTGAAGCTGGAACAGCGCAAATGGAGG TGATTTCAAAACTTTCGAGTAGGGTCGAGGATTTGGAGAAGAGATTGTGCAACAACAAGTCTACTAGGAGGAGCAGAAGAAGATGCAGGTCAGCAAAGAA AAAGGACGCCAGCCCTGCTGCCTAA
AA sequence Show only first row Show all	>Lus10010133 pacid=23158881 polypeptide=Lus10010133 locus=Lus10010133.g ID=Lus10010133.BGIv1.0 annot-version=v1.0 MSLSAVRKRAKDLEETRILLGVQRHFSYTVSETKGFWEQETVVEMYPACRHMDLHHPTGGYIPTFLAHPGVDSSKQSKACKPWPSSPNNYGGFPGSGYGC NGYGDYPVHHGSYFPYPYPAPSQIFCCGHQPCPSPFYAPYYPSPPYYGMELNPNGLNNDVRHCCGCPNHTHSERSPHAVKVEELEPDTKGKQVDSFLPLQ LKGNRYPIVWFPGECMNNRNEVQQADQSRGGIEASRDSDVHEQNKLSKRQPNGWFPLDMNHLASLFGDGEKRSLSHRDGDKEFQVPFVWMPSREDQEHSY KGTDEKSIDPLHLVEKTHPLFKIFQPEHLGVKNNADKHPELKEDPSRSHGGSGEKEKHEKTIPVTELKPCKDYENFEDKVACNRVGSSARAKDDVKSKIT DAKRQSSSPSKTAKLSPVCLRVDPLPKKKNGSSRSPSPLGSKGKTLETSQDSCKTTAVTDTIVKDHENSLDVGSTPTKEEKDETNAEYNMDTLLQPASVS ETGELRRQGCSRDESRVVTKEPTDSVVLANGGQTTGVKRLSKEEAAKLIQSVYRGYNVRKWEPLKKLKQIAGVREQLTGVRNGIRALETSTECDEKQKVA RGEMIMNLLLKLDSIQGLHPNFRDIRKSLAKELVTLQEHLDSLEIKKQEVSNPSGGNYVGNHASENSGENTCISPKDDGCDASTPSSVTKEALASEAVGS SAGNEPELMLSDGDSPSKVDERTDDSVLMNIGVKEDVGAVVPQVVGSGPEGTGVAMQINDVLKGSSPDVLSFEAYVPAGVGVTGEEKCVNSEKQSNEGFG DEVPEKKVNADVPAGEAIEVEGVEELCDFQDVTQERHASGSVVIKGAVAMQKEALTMENEVAESGAAAPSVGVNGGGIEGVPNKTETSLHKDQPSQSEAA FYSLIHEGDKQDIHPQREEHEKSNKGKEQAGELADGITEADPVSSSQATKEILLPEKASQLEEDIETTEMAELDLDIETDGDEKSDDVQKPASLGKEDEN VVAEKKKGFEEENARRMKELMEKLVEAGTAQMEVISKLSSRVEDLEKRLCNNKSTRRSRRRCRSAKKKDASPAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10010133 [exp]	0	1
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10012648 [exp]	1.0	0.9887
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10035781 [exp]	2.0	0.9646
AT3G10020			unknown protein		Lus10003372 [exp]	3.5	0.9648
AT2G20560			DNAJ heat shock family protein...		Lus10015402 [exp]	3.5	0.9705
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10034592 [exp]	5.9	0.9549
AT1G44414			unknown protein		Lus10018166 [exp]	6.7	0.9353
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Lus10003380 [exp]	6.9	0.8732
AT5G35320			unknown protein		Lus10020176 [exp]	8.1	0.9048
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	8.4	0.9621
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027517 [exp]	8.5	0.9621

Compare expression of checked genes

Lus10010133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.