Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46230 333 / 7e-117 PIN domain-like family protein (.1.2) AT1G26530 261 / 2e-88 PIN domain-like family protein (.1) AT2G34570 50 / 5e-07 MEE21 maternal effect embryo arrest 21, PIN domain-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012649 [exp] 405 / 3e-144 AT2G46230 332 / 6e-117 PIN domain-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G092600 [exp] 370 / 4e-131 AT2G46230 318 / 2e-112 PIN domain-like family protein (.1.2) Potri.002G166200 [exp] 362 / 7e-128 AT2G46230 332 / 9e-118 PIN domain-like family protein (.1.2) Potri.004G197200 [exp] 59 / 6e-10 AT2G34570 297 / 3e-101 maternal effect embryo arrest 21, PIN domain-like family protein (.1) Potri.009G159400 [exp] 56 / 2e-09 AT2G34570 210 / 2e-68 maternal effect embryo arrest 21, PIN domain-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF04900 [flax] [poplar] Fcf1 Fcf1
Representative CDS sequence Show only first row Show all	>Lus10010134 pacid=23158848 polypeptide=Lus10010134 locus=Lus10010134.g ID=Lus10010134.BGIv1.0 annot-version=v1.0 ATGGGGAAGGCGAAGAAGGGACCGAAGTTTGCGGTGATGAAGAAGATGATCACCTCGAAGGCGATTAAGCACTACAAGGAGGAGATTCTGAACCCCAATA GGAAAGACCTTACCAAGGAAAATCTACCTAGAAACGTGCCGAAGGTGTCTTCGTCGCTTTATTTTACGCACAACACTGCTTTGGGACCGCCGTACAGGGT ATTGGTGGATACCAATTTCATAAATTTCTCTATTCAGAACAAACTGGACTTGGAAAAAGCCATGATGGACTGCCTGTACGCAAAATGCACTCCTTGCATC ACTGATTGTGTAATGGCTGAGCTTGAGAAGCTAGGTCAGAAGTACCGCGTAGCTTTGAGAATTGCTAAGGATCCACGTTTTGAGAGAATACCTTGCATTC ATAAAGGAACCTATGCCGATGACTGCATTGTCTCCAGGGTCACTCAGCACAAGTGCTACATTGTTGCAACTTGTGATCGAGATTTGAAGCGGAGGATTCG AAAGGTACCTGGAGTACCGATAATGTATATCACTCAACATAAATATTCAGTGGAGCGCATGCCTGAAGCCACAATTGGCGGAGGTAAAGGCTTTATAGGC CTCATGCTTGATTCCATATGGCTGATTTGGTTTTCAGACTGTTACTATCACCAGCTGAATGATGTCTATTATTTTATGGCTTCCTCTCATATGTGTCCCG TTCTTTCTACATGCAGCTCCAAGATATTGATGTTACTTTCGGTAGAGGGAGATCCAGGTCTATGTGGAGCGCGAAAGGTTTTGTACTGGGGAATTTGCTA CAGTTGTATAATCATCCATTATGATCCTCTCTTCTTTCGCTGCAACGACATAGATATATAG
AA sequence Show only first row Show all	>Lus10010134 pacid=23158848 polypeptide=Lus10010134 locus=Lus10010134.g ID=Lus10010134.BGIv1.0 annot-version=v1.0 MGKAKKGPKFAVMKKMITSKAIKHYKEEILNPNRKDLTKENLPRNVPKVSSSLYFTHNTALGPPYRVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCI TDCVMAELEKLGQKYRVALRIAKDPRFERIPCIHKGTYADDCIVSRVTQHKCYIVATCDRDLKRRIRKVPGVPIMYITQHKYSVERMPEATIGGGKGFIG LMLDSIWLIWFSDCYYHQLNDVYYFMASSHMCPVLSTCSSKILMLLSVEGDPGLCGARKVLYWGICYSCIIIHYDPLFFRCNDIDI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46230			PIN domain-like family protein...		Lus10010134 [exp]	0	1
AT4G14320			Zinc-binding ribosomal protein...		Lus10010195 [exp]	2.4	0.9537
AT1G07830			ribosomal protein L29 family p...		Lus10032334 [exp]	3.7	0.9403
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	4.9	0.9249
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	4.9	0.9332
AT3G17300		EMB2786	unknown protein		Lus10037835 [exp]	5.5	0.9200
AT5G08420			RNA-binding KH domain-containi...		Lus10026187 [exp]	6.9	0.8899
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10032123 [exp]	8.6	0.8952
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10040040 [exp]	8.8	0.9226
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10022057 [exp]	9.0	0.9343
AT1G41880			Ribosomal protein L35Ae family...		Lus10028254 [exp]	9.7	0.9316

Compare expression of checked genes

Lus10010134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.