Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46220 254 / 2e-85 Uncharacterized conserved protein (DUF2358) (.1) AT1G79510 186 / 4e-58 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) AT1G16320 184 / 1e-57 Uncharacterized conserved protein (DUF2358) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012651 [exp] 500 / 0 AT2G46220 256 / 4e-86 Uncharacterized conserved protein (DUF2358) (.1) Lus10009597 [exp] 184 / 2e-57 AT1G79510 284 / 2e-96 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Lus10001766 [exp] 179 / 2e-55 AT1G79510 281 / 3e-95 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G092200 [exp] 303 / 1e-104 AT2G46220 273 / 5e-93 Uncharacterized conserved protein (DUF2358) (.1) Potri.010G173000 [exp] 191 / 4e-60 AT1G79510 357 / 4e-125 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Potri.008G083400 [exp] 94 / 4e-24 AT1G79510 192 / 1e-62 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Potri.013G036500 [exp] 40 / 0.0004 AT3G04890 242 / 2e-81 Uncharacterized conserved protein (DUF2358) (.1), Uncharacterized conserved protein (DUF2358) (.2) Potri.002G162800 [exp] 40 / 0.0008 AT2G46100 286 / 5e-98 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF10184 [flax] [poplar] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Lus10010135 pacid=23158859 polypeptide=Lus10010135 locus=Lus10010135.g ID=Lus10010135.BGIv1.0 annot-version=v1.0 ATGGCGCTGATCATTCATTCCCCCGAAATCTCCTCCTCCAAGATCCTCTTCAACCCTAACCCGACTTCAAGGCATCTCAAGACCCCCTCTTCCAGATTGG TCTCCAGGGTCAAGGTTGGGGTTCGAGACTCCGAGGTTAGGGTTCCAGGGTTGACCCGCGATGATTCGATGATGTTATATGGTCAGTTCTCTGCCCCTGT GGTGAATCCAGGTACTAAGAGGAGCAACGAGGAAGATGAGGAGAAGCAGAATTATTATGTCAATATGGGACACGCCATCAGGACTCTCAGAGAGGAGCTC CCTCTCCTCTTCTACAACCAGCTCACTTTCGATATCTACAGGGACGATATCGTATTCAAAGATCGTATCAACACGTTGATTGGCATTCAGAACTACAAGA CATTGTTTTGGGCACTGCGTATCATAGGCAGGATGTTGTTCAAGGGATTGTCTGTTGACATCATTAGTGTTTGGCAACCTGTTGAGGATGTGATACTGCT CCGGTGGGCACTACATGGGGTCCCGCGAGTTCCATGGGAGGGTCTGGCTCGTCTCGATGGAATCTCAGAGTACAAACTGGACAACAAAGGCAAGATTTAT CAGCACAAAGTAGACAACATGGCTTTTAACTCACCTCCTCCAAAGTTCAGAGTGATGGGTATGGAGGAACTACTCCAGGCAATTGGTTGTCCCTCAACGC CGAGACCTACTTATTTTGAGGCATCCTCTGTGCCGCCAGAGAAGAACTAG
AA sequence Show only first row Show all	>Lus10010135 pacid=23158859 polypeptide=Lus10010135 locus=Lus10010135.g ID=Lus10010135.BGIv1.0 annot-version=v1.0 MALIIHSPEISSSKILFNPNPTSRHLKTPSSRLVSRVKVGVRDSEVRVPGLTRDDSMMLYGQFSAPVVNPGTKRSNEEDEEKQNYYVNMGHAIRTLREEL PLLFYNQLTFDIYRDDIVFKDRINTLIGIQNYKTLFWALRIIGRMLFKGLSVDIISVWQPVEDVILLRWALHGVPRVPWEGLARLDGISEYKLDNKGKIY QHKVDNMAFNSPPPKFRVMGMEELLQAIGCPSTPRPTYFEASSVPPEKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	0	1
AT2G46220			Uncharacterized conserved prot...		Lus10012651 [exp]	1.0	0.9771
AT5G57910			unknown protein		Lus10035808 [exp]	1.7	0.8476
AT4G12010			Disease resistance protein (TI...		Lus10015648 [exp]	4.2	0.8282
AT4G01400			unknown protein		Lus10012607 [exp]	7.2	0.8130
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	8.0	0.8312
AT5G15802			unknown protein		Lus10008785 [exp]	8.6	0.8586
					Lus10023092 [exp]	9.7	0.8076
					Lus10025227 [exp]	10.5	0.8173
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	12.4	0.8054
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10023517 [exp]	13.0	0.8120

Compare expression of checked genes

Lus10010135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.