Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09080 125 / 2e-34 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 120 / 1e-32 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 118 / 5e-32 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 109 / 6e-29 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 109 / 6e-29 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G16030 108 / 1e-28 HSP70B heat shock protein 70B (.1) AT3G12580 108 / 1e-28 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT3G09440 108 / 2e-28 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G56410 107 / 5e-28 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G09590 79 / 2e-18 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015483 [exp] 128 / 2e-35 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10022375 [exp] 127 / 4e-35 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10013055 [exp] 124 / 1e-34 AT1G09080 332 / 8e-107 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10008322 [exp] 117 / 1e-34 AT1G09080 188 / 8e-57 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10017022 [exp] 125 / 2e-34 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10023016 [exp] 120 / 2e-34 AT5G28540 246 / 9e-77 heat shock protein 70 (Hsp 70) family protein (.1) Lus10029103 [exp] 124 / 3e-34 AT5G28540 615 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10008324 [exp] 118 / 5e-34 AT1G09080 261 / 3e-83 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10032430 [exp] 123 / 1e-33 AT5G42020 1033 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087500 [exp] 122 / 1e-33 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 122 / 2e-33 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G143600 [exp] 120 / 5e-33 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.013G018000 [exp] 117 / 1e-31 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042600 [exp] 112 / 6e-30 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 111 / 1e-29 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 108 / 9e-29 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 108 / 2e-28 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 108 / 2e-28 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054700 [exp] 106 / 5e-28 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10010136 pacid=23158900 polypeptide=Lus10010136 locus=Lus10010136.g ID=Lus10010136.BGIv1.0 annot-version=v1.0 ATGGATTTTTCAGAACGGTTAACGAGAGCGAAGTTCGAAGAGTTGAATATGGATCTCTTCAACAAGACGTTAGATGCGGTAAAGAAGACGCTGGAAGATG GCAAGATTGACAAGAAGAGAATTGACGAGATTGTGCATGTGGGTGGGAGCACAAGGATTCCAAAGCTAAGCCAGATGTTGAAAGATATGTTCAATGGCAA GGAGCCCAGCAAAGGTGTGAACCCAGATGAAGCTGTAGCTTATGGTGCTGCTCTTCTTGGAGCCAAACTCAGCGGCGGATCTTCTGCTATACATGATATG CTGTATGCACAGTTGAATATGGATATCTTCTTAATTACTGTCTTATCATCTGTAGGTGACTAA
AA sequence Show only first row Show all	>Lus10010136 pacid=23158900 polypeptide=Lus10010136 locus=Lus10010136.g ID=Lus10010136.BGIv1.0 annot-version=v1.0 MDFSERLTRAKFEELNMDLFNKTLDAVKKTLEDGKIDKKRIDEIVHVGGSTRIPKLSQMLKDMFNGKEPSKGVNPDEAVAYGAALLGAKLSGGSSAIHDM LYAQLNMDIFLITVLSSVGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10010136 [exp]	0	1
AT2G15020			unknown protein		Lus10026592 [exp]	11.5	0.8045
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020440 [exp]	13.0	0.6949
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10032369 [exp]	28.9	0.7400
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10027415 [exp]	31.8	0.7172
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000405 [exp]	43.2	0.6610
AT2G40780			Nucleic acid-binding, OB-fold-...		Lus10012866 [exp]	47.0	0.6886
AT4G27390			unknown protein		Lus10037884 [exp]	70.5	0.6873
					Lus10024550 [exp]	77.9	0.6862
AT2G20420			ATP citrate lyase (ACL) family...		Lus10024923 [exp]	79.7	0.6862
AT4G01830		ABCB5, PGP5	ATP-binding cassette B5, P-gly...		Lus10004529 [exp]	81.4	0.6862

Compare expression of checked genes

Lus10010136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.