Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 330 / 1e-113 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040419 [exp] 360 / 2e-125 AT5G24090 362 / 3e-126 chitinase A (.1) Lus10040420 [exp] 356 / 3e-124 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10023535 [exp] 355 / 1e-123 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10009216 [exp] 355 / 1e-123 AT5G24090 360 / 1e-125 chitinase A (.1) Lus10037985 [exp] 353 / 8e-123 AT5G24090 357 / 2e-124 chitinase A (.1) Lus10009215 [exp] 349 / 3e-121 AT5G24090 371 / 6e-130 chitinase A (.1) Lus10023534 [exp] 347 / 3e-120 AT5G24090 355 / 1e-123 chitinase A (.1) Lus10001868 [exp] 322 / 6e-111 AT5G24090 332 / 1e-114 chitinase A (.1) Lus10037984 [exp] 307 / 5e-103 AT5G24090 322 / 1e-108 chitinase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242000 [exp] 367 / 2e-128 AT5G24090 387 / 3e-136 chitinase A (.1) Potri.002G165700 [exp] 357 / 1e-124 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.014G091700 [exp] 357 / 1e-124 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.015G024200 [exp] 343 / 4e-119 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.012G033866 [exp] 335 / 7e-116 AT5G24090 352 / 3e-122 chitinase A (.1) Potri.015G024000 [exp] 333 / 4e-115 AT5G24090 337 / 2e-116 chitinase A (.1) Potri.015G024100 [exp] 333 / 7e-115 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G023900 [exp] 332 / 1e-114 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.015G024150 [exp] 332 / 1e-114 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.014G091600 [exp] 330 / 8e-114 AT5G24090 362 / 3e-126 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10010137 pacid=23158915 polypeptide=Lus10010137 locus=Lus10010137.g ID=Lus10010137.BGIv1.0 annot-version=v1.0 ATGGGGATCATTCCACTCGTCTTACTGGCACTAATCATTCTCCCAATATCCACAAACGCAGCAGGCAGCATCGCCATCTACTGGGGCCAAAACGGCGCCG CTGAAGGCACCTTGTCCCAAACTTGCGCCTCTGGCAAATACCAATTCGTAAACATAGCATTCCTACCCTTCTTCGGAAACGGCCGCCGTTCCCCTGCCTT GGACCTCTCCGGCCACTGCAACCCCAACACCGGCGGATGCAGATCCCTCTCGGCCGACATAAACTCATGCCAGTCCAGAGGAGTCAAGGTGTTCCTCTCC ATAGGCGGCGGAGCAGGGGTTTACTCCCTGTCCTCCACCGCCGACGCTAGGCAGTTCGCCAACTACCTCTTCAACAACTTCCTCAGCGGGAGGTCCGCCA CTCGTCCTTTTGGTCCGGCTGTCCTGGACGGTATCGATTTTGATATCGAGCTGGGATCCAACCAGCATTACGACGAGCTGGCGAGGTTCCTTTCCGGATT CAGCGGGAATAAGAAAGTTTACTTGTCGGCGGCTCCGCAGTGTCCGTTTCCTGACGGTCAAATGGGTCAAGCGTTGACTACGGGATTGTTTGACTATGTT TGGGTACAGTTCTATAACAACCCACAGTGTGAGTTCAAGTCTAACAAGGGCTTTTTCGATGCTTGGAGACAGTGGAATGGGATCAAGGCAGGGCAGATAT TTTTGGGCTTGCCGGCGTCGACTACGGCGGCTGGAAGTGGGTTTATTGCGCCGGGGGATCTTGTTAACAAGGTGCTTCCAGTGATAAAGCGGTCGAACAA GTACGGTGGGATAATGTTGTGGTCAAAGTTTTACGATGACCAGACTGGGTATAGCAGCGCCGTCAAGTCTCGTGTCTAA
AA sequence Show only first row Show all	>Lus10010137 pacid=23158915 polypeptide=Lus10010137 locus=Lus10010137.g ID=Lus10010137.BGIv1.0 annot-version=v1.0 MGIIPLVLLALIILPISTNAAGSIAIYWGQNGAAEGTLSQTCASGKYQFVNIAFLPFFGNGRRSPALDLSGHCNPNTGGCRSLSADINSCQSRGVKVFLS IGGGAGVYSLSSTADARQFANYLFNNFLSGRSATRPFGPAVLDGIDFDIELGSNQHYDELARFLSGFSGNKKVYLSAAPQCPFPDGQMGQALTTGLFDYV WVQFYNNPQCEFKSNKGFFDAWRQWNGIKAGQIFLGLPASTTAAGSGFIAPGDLVNKVLPVIKRSNKYGGIMLWSKFYDDQTGYSSAVKSRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24090		ATCHIA	chitinase A (.1)		Lus10010137 [exp]	0	1
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10015046 [exp]	3.5	0.8759
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10014518 [exp]	4.6	0.8884
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	5.7	0.8845
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031271 [exp]	6.3	0.8703
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10036758 [exp]	9.8	0.8737
AT1G52190			Major facilitator superfamily ...		Lus10035860 [exp]	12.0	0.8437
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	12.7	0.8625
					Lus10018215 [exp]	13.1	0.8613
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	15.1	0.8626
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	15.6	0.8386

Compare expression of checked genes

Lus10010137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.