Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01240 603 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G05390 441 / 2e-152 unknown protein AT5G40830 266 / 8e-85 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G27230 257 / 3e-81 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29790 201 / 5e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G10440 49 / 6e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 49 / 6e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 48 / 1e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 47 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 45 / 0.0001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004494 [exp] 430 / 5e-148 AT3G05390 699 / 0.0 unknown protein Lus10029907 [exp] 424 / 7e-146 AT3G05390 697 / 0.0 unknown protein Lus10035135 [exp] 366 / 1e-122 AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031968 [exp] 360 / 2e-120 AT4G01240 372 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020803 [exp] 278 / 2e-89 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 273 / 2e-87 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10034506 [exp] 240 / 2e-74 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024318 [exp] 231 / 3e-71 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033164 [exp] 234 / 1e-70 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165300 [exp] 668 / 0 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G019400 [exp] 444 / 3e-153 AT3G05390 753 / 0.0 unknown protein Potri.004G116900 [exp] 387 / 4e-131 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G135100 [exp] 281 / 1e-90 AT3G05390 278 / 3e-89 unknown protein Potri.004G231100 [exp] 281 / 3e-90 AT3G05390 287 / 2e-92 unknown protein Potri.004G083800 [exp] 273 / 2e-87 AT3G05390 278 / 3e-89 unknown protein Potri.005G236600 [exp] 258 / 1e-81 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 255 / 2e-80 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G352700 [exp] 200 / 1e-59 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.011G079000 [exp] 189 / 1e-55 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010138 pacid=23158919 polypeptide=Lus10010138 locus=Lus10010138.g ID=Lus10010138.BGIv1.0 annot-version=v1.0 ATGGGGAAACCCAGTATTTTGATAAGGTTATCTGGTAGATGGATTGGGTCACACAAACCCATCATGATACTTGTCATATTAGCCATCCTGGTCTCCATCG CCACTCTCTCCAAGTTCTACTTCATCACTTCTCTTTCAATCTCCGACACCTTCTGCACCCGTGTTATGGATATCGAATCGCACAACAGCTTTGCCGCTGG AGATGTTCATGCTCATCATTCCCAATCAGCAATTCTCCAGAAAATCCGAAACGAGATAAACGAGACAGGAACGATGAACTCTGTTCCAACCTCAAGGTAC AATGCTTTCTTAACCGAGATTTTGGATCTTCTTCAGGAAACAACATATAGCCACCCTCTCGCAACAACAAGGCGGAAAGAGGATCGCTCTGATCACGATC AAGCAGCAGCCGAATTCTTCCTGATCGAAGAGATCCGCAAGTACGTCAGGATCAAACCCAACAGATTGGGGAAACAGAATTTCATGGGAGCTAACGGTAC ATTCACCAGCATCGGCCACGCTTGTTTCGCAATGAAGGACGAACTCGAAGAGTACATGGATTACGACGTAGGAGAAATCTGCAAAGACGACTGGAAGCTA GCTCAGAGATTGATGGTCCACGGTTGCGATCCTTTGCCAAGGAGGAGATGTCTCTCAAGAGCTCCACAGCTCTACATGAAACCGTTCCCAATCAACGAAT CGATATGGAAGCTCCCAGACGATCGAAATGTGAGGTGGAGTGGTTATAGATGCAAAAACTTCACTTGCCTTGCTGCAAACGGTACTCGAAAAGGGTTCTT CAAATGTGCCGATTGTTTCAATTTGACACACCATGAAATGCCGAGATGGATGGAGGTTAAGCTCGATCCGATAACGAATCTCACTGCTGATTTCCTGATA TCCGATGTGTTGGGGATCAAGCCTGGGGAGATTCGAGTCGGGTTGGATTTCAGCGTAGGGACGGGGACGTTTGCAGCTCGAATGAGGGAGTTCGATGTCA CGATTGCTTCAGGTACAATCAACCTCGGAGCGCCTTTCAACGAGATGATTTCGTTGAGAGGGTTGCTGCCGATTTACCTGAGCATAAACCAGCGGCTTCC TTTCTTCGACAACACGCTGGATTTGATACACACAACGAGGTTTCTGGACGGGTGGATCGATTTCGTGCTGCTGGACTTCATACTGTACGATTGGGACAGA GTTCTGAGGCCTGGTGGGTTGCTGTGGATAGATAGCTTTTTTTGTTTGAAAGAAGAGTTGGATGATTACTTGGAATCATTCAAGATGCTGAGGTACAGGA AGCGGAAATGGGTTGTTGTTCCGAAGATGGATAAGGATGATCGAGAAGTGTTCTTCTCTGCTGTACTGGAGAAGCCTCCAAGACCATTTTAG
AA sequence Show only first row Show all	>Lus10010138 pacid=23158919 polypeptide=Lus10010138 locus=Lus10010138.g ID=Lus10010138.BGIv1.0 annot-version=v1.0 MGKPSILIRLSGRWIGSHKPIMILVILAILVSIATLSKFYFITSLSISDTFCTRVMDIESHNSFAAGDVHAHHSQSAILQKIRNEINETGTMNSVPTSRY NAFLTEILDLLQETTYSHPLATTRRKEDRSDHDQAAAEFFLIEEIRKYVRIKPNRLGKQNFMGANGTFTSIGHACFAMKDELEEYMDYDVGEICKDDWKL AQRLMVHGCDPLPRRRCLSRAPQLYMKPFPINESIWKLPDDRNVRWSGYRCKNFTCLAANGTRKGFFKCADCFNLTHHEMPRWMEVKLDPITNLTADFLI SDVLGIKPGEIRVGLDFSVGTGTFAARMREFDVTIASGTINLGAPFNEMISLRGLLPIYLSINQRLPFFDNTLDLIHTTRFLDGWIDFVLLDFILYDWDR VLRPGGLLWIDSFFCLKEELDDYLESFKMLRYRKRKWVVVPKMDKDDREVFFSAVLEKPPRPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10010138 [exp]	0	1
AT3G13600			calmodulin-binding family prot...		Lus10025173 [exp]	2.2	0.7468
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Lus10001277 [exp]	2.8	0.6990
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10034963 [exp]	9.2	0.7194
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Lus10002203 [exp]	11.0	0.6540
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	15.4	0.7254
AT5G53900			Serine/threonine-protein kinas...		Lus10041936 [exp]	17.5	0.6906
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	18.3	0.7369
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	18.7	0.7062
AT1G66510			AAR2 protein family (.1.2.3)		Lus10028528 [exp]	22.1	0.7110
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Lus10029908 [exp]	22.8	0.6781

Compare expression of checked genes

Lus10010138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.