Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01470 182 / 7e-60 LSR3, LEA14 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) AT2G46140 176 / 4e-57 Late embryogenesis abundant protein (.1) AT2G44060 81 / 1e-18 Late embryogenesis abundant protein, group 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001869 [exp] 307 / 5e-109 AT1G01470 182 / 1e-59 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10010140 [exp] 226 / 9e-77 AT1G01470 191 / 3e-63 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10001876 [exp] 204 / 8e-65 AT1G01470 178 / 3e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10036402 [exp] 191 / 1e-63 AT1G01470 167 / 4e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10007905 [exp] 189 / 1e-62 AT1G01470 170 / 2e-55 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10008337 [exp] 82 / 6e-19 AT2G44060 465 / 2e-165 Late embryogenesis abundant protein, group 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090800 [exp] 207 / 9e-70 AT2G46140 206 / 5e-69 Late embryogenesis abundant protein (.1) Potri.002G165000 [exp] 184 / 1e-60 AT2G46140 189 / 3e-62 Late embryogenesis abundant protein (.1) Potri.007G146300 [exp] 79 / 8e-18 AT2G44060 448 / 2e-159 Late embryogenesis abundant protein, group 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10010139 pacid=23158891 polypeptide=Lus10010139 locus=Lus10010139.g ID=Lus10010139.BGIv1.0 annot-version=v1.0 ATGGCGAATCTGTTTGACCAGGCGAAGAATTTGGTGGCCGAGACGGTTGGCAGCATACCTGTCCCGGAAGCCACAGTTACAGACGTTGATCTGAACGGTG TCCGCCTCGACCACATCGAATATGTCGCTAGGGTCTCCGTAGACAATCCTTACCCAGCTCCCATCCCCATCAGCGAGATCTCGTACAACCTCAAAAGCAA CGGCAGAGTGATAGCGCACGGGACGGTACCAGACCCAGGGTCTCTGAAGGCCAACGGGAAGACGGATTTGAACGTGATAGTGAAAGTGCCACACACCATA CTTGTTAGTCTGGTTGCTGACATAACCAAGGATTGGGACATCGACTATGAACTTGAGTTGGGGCTTGCTATTGATCTTCCTGTAGTGGGCACTTTCACCA TTCCTCTTTCCAGCAAAGGCGAGATCAAGCTTCCTACCCTCTCTGATGTCTTCTCTTTTGGAAAGAAAAAGGAGTAG
AA sequence Show only first row Show all	>Lus10010139 pacid=23158891 polypeptide=Lus10010139 locus=Lus10010139.g ID=Lus10010139.BGIv1.0 annot-version=v1.0 MANLFDQAKNLVAETVGSIPVPEATVTDVDLNGVRLDHIEYVARVSVDNPYPAPIPISEISYNLKSNGRVIAHGTVPDPGSLKANGKTDLNVIVKVPHTI LVSLVADITKDWDIDYELELGLAIDLPVVGTFTIPLSSKGEIKLPTLSDVFSFGKKKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10010139 [exp]	0	1
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10001132 [exp]	3.7	0.9201
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	4.4	0.9358
AT3G19200			unknown protein		Lus10019867 [exp]	8.5	0.9272
AT3G09280			unknown protein		Lus10021099 [exp]	8.9	0.8835
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021936 [exp]	10.1	0.9204
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10032282 [exp]	10.2	0.9241
AT3G24750			unknown protein		Lus10025939 [exp]	10.7	0.9286
AT5G14920			Gibberellin-regulated family p...		Lus10032168 [exp]	14.1	0.9216
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	22.6	0.9016
AT4G35200			Arabidopsis protein of unknown...		Lus10023953 [exp]	24.4	0.8865

Compare expression of checked genes

Lus10010139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.