Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01470 192 / 2e-63 LSR3, LEA14 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) AT2G46140 181 / 5e-59 Late embryogenesis abundant protein (.1) AT2G44060 93 / 6e-23 Late embryogenesis abundant protein, group 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001876 [exp] 280 / 4e-94 AT1G01470 178 / 3e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10001869 [exp] 226 / 8e-77 AT1G01470 182 / 1e-59 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10010139 [exp] 226 / 1e-76 AT1G01470 182 / 6e-60 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10036402 [exp] 214 / 3e-72 AT1G01470 167 / 4e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10007905 [exp] 212 / 2e-71 AT1G01470 170 / 2e-55 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10008337 [exp] 92 / 3e-22 AT2G44060 465 / 2e-165 Late embryogenesis abundant protein, group 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090800 [exp] 227 / 3e-77 AT2G46140 206 / 5e-69 Late embryogenesis abundant protein (.1) Potri.002G165000 [exp] 198 / 8e-66 AT2G46140 189 / 3e-62 Late embryogenesis abundant protein (.1) Potri.007G146300 [exp] 91 / 5e-22 AT2G44060 448 / 2e-159 Late embryogenesis abundant protein, group 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10010140 pacid=23158861 polypeptide=Lus10010140 locus=Lus10010140.g ID=Lus10010140.BGIv1.0 annot-version=v1.0 ATGTTGTCATCGTTGTCGCGGCGGCTAATAGCGATGGACAGGGCGAAGAACTACATAACAGAGAAAGTGACCAACATGAAGAAACCTGAAGCTTCAGTCA CCAACGTCGACCTCAAGAGCCTCCACAGCAGTCACATAGAGTACGCGGCCAAGGTCTCGGTCGAGAACCCTTACCCTACTCCGATCCCGATTTGCGAGAT CACCTACGTGCTCAAGAGTGACGGCAGGGTGATCGCGCATGGGACCATCCCCGACCCTGGATCGCTCAAGGCGGGAGGGAAGACCGATCTCGAGGTACCG GTGAAAGTACCACACAGCATACTGGTGAGCCTAGTGAGAGACATAGGTAGGGATTGGGACATTGACTATGAGTTGGAGTTGGGTCTTGTCATCGATCTAC CTGTTGTCGGGAACTTCACCATTCCTTTGTCCAGCAAGGGTGAGGTCAAGCTCCCTACTCTCTCCGATGTTTTCTCTTCTGGTGCTACTTCTAACAACAA CAACAACAACAGCAAGAAGTGA
AA sequence Show only first row Show all	>Lus10010140 pacid=23158861 polypeptide=Lus10010140 locus=Lus10010140.g ID=Lus10010140.BGIv1.0 annot-version=v1.0 MLSSLSRRLIAMDRAKNYITEKVTNMKKPEASVTNVDLKSLHSSHIEYAAKVSVENPYPTPIPICEITYVLKSDGRVIAHGTIPDPGSLKAGGKTDLEVP VKVPHSILVSLVRDIGRDWDIDYELELGLVIDLPVVGNFTIPLSSKGEVKLPTLSDVFSSGATSNNNNNNSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10010140 [exp]	0	1
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	5.9	0.9739
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	8.1	0.9735
AT4G28050		TET7	tetraspanin7 (.1)		Lus10038964 [exp]	9.3	0.8989
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	9.6	0.9718
AT5G60330			unknown protein		Lus10018274 [exp]	11.7	0.9705
AT1G28030			2-oxoglutarate (2OG) and Fe(II...		Lus10037429 [exp]	12.7	0.8177
					Lus10041024 [exp]	13.8	0.9650
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029821 [exp]	15.5	0.9290
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	16.1	0.9627
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10002511 [exp]	17.1	0.8314

Compare expression of checked genes

Lus10010140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.