Plant FIBer expression Database

Lus10010141 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61540 636 / 0 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001877
[exp]
845 / 0 AT3G61540 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G164700
[exp]
671 / 0 AT3G61540 666 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Potri.014G090601
[exp]
407 / 8e-140 AT3G61540 353 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10010141 pacid=23158854 polypeptide=Lus10010141 locus=Lus10010141.g ID=Lus10010141.BGIv1.0 annot-version=v1.0
ATGAGGCAAATGAGGATGATGTTGGCAATACACGCGCCACCCAACTTCCTGATTAAGTCCCACCATCTTTACTTCGTCTCTTCATTCTGCTCCTTTTCTC
CTCCTCCTCCGGCTTTTCCGCTGCCACCCTCGCTCGCCGCCGCTAGACCTCTTACCCGCTTTAAAACCCCCCGTCCCGTGGCCGTTACATTTTGCACCAT
GGCCGTAAATAATCTCTCCTCACCCTTGCTTTCTCCGCCGGAGCATGTAGTTGGACCTTGGTATTCCGTTCCATACCTCCGGCTTCGCGATCACCGATTC
TCCGTTCCCCTCAACTATTCCTCGGCTGATCGCAACGCTTCTCCGAAACTCACCGTCTTTGCTCGCGAAGTCGTTGGCGTTGGGAAAGAAGACCAACCAA
TGCCATACCTTCTGTACCTGCAAGGCGGTCCAGGTTTTGAGTGTCCACGTCCTTCTGAAGCTAGCGGATGGCTACAGAAAGCCTGCGAGGAATTTCGCGT
AGTTCTCATGGATCAGGCATGGCTTCTTAGAGGAACGGGCTTATCTACCGCTTTGACACCTTCATCTATGTCTCAATTTGGTTCTGTGGAGGAGGTTGCT
GAGTACTTGACAAACTTTCGAGCTGACAACATTGTGAAAGATGCAGAGTTTATCCGGATTCGACTTGTTCCTGATGCTGGACCCTGGACAGTTTTGGGTC
AGGGTTATCTGCTAGTGATGCCACTACTTGTGCTTGCTAGCTACGGTGGATTTTGTGCAGTGACTTACTTAAGTTTTGCACCTCAAGGACTAAAGCAAGT
GCTTCTAACTGGAGGGACACCTCCTTTAGGAGATCACTGCACTGCAGATACTGTCTACAGAGTTTGCAGTGAACAAGTTATTTGCCAGAATGAGAAGTAC
TATGAGAGGTTCCCTCAGGATGTTGAGATTGTTCGTGAAGTAGTCGAGTATCTAGCTAATGCAGAAGGAGGCGGGGTGCCTCTTCCATCAGGGGGATTCT
TAACGCCAAAAGGGCTACAAACTCTTGGTCTTTCTGGTCTGGGATCTAGTTCAGGTTTTGAACGTTTGCATTACTTGTTTGAGAGAGCATGGGATCCTAT
AATAGTTCAAGGATCACAGAAGCAAATCAGTGACTACTTCCTGAATGGCTTTGATAATTGGTTGGATTTTGGTACCAACCCGCTATATGCTCTCATGCAG
GAATCTATCTACTGTCAGGGTGCCGCATCACAGTGGTCTGCTCATAGAATAAGGGGTGAAGATGGTGGAAAATTTGATGCAATCAAAGCCATTGAAGAGG
GCCGTCCTATACTTTTCACAGGGGAGATGGTGTTTCCATGGATGTTTGATGAAGTTTTCTCTCTAAAGAAATACAAAGAGGTGGCTCAGTTATTGGCTGA
GAAGAATGATTGGCCTGCTTTGTACGACACGGATGTGCTTAGCCGCAATAAGGTGCCTGTTGCGGCAGCTGTTTACTACGATGACATGTACGTAAATTTC
AAGGTGGCGAAAGAGACAGCATCTAAGATTGCAGGTATAAGGGTGTGGATAACGAATGAGTACATGCATTCGGGTCTCAGAGACGGAGGAGGGCAGGTAC
TGGATCAGTTACTGGGCATGTTGAACGGCAAGAAGCCGTTGTTCTGA
AA sequence
>Lus10010141 pacid=23158854 polypeptide=Lus10010141 locus=Lus10010141.g ID=Lus10010141.BGIv1.0 annot-version=v1.0
MRQMRMMLAIHAPPNFLIKSHHLYFVSSFCSFSPPPPAFPLPPSLAAARPLTRFKTPRPVAVTFCTMAVNNLSSPLLSPPEHVVGPWYSVPYLRLRDHRF
SVPLNYSSADRNASPKLTVFAREVVGVGKEDQPMPYLLYLQGGPGFECPRPSEASGWLQKACEEFRVVLMDQAWLLRGTGLSTALTPSSMSQFGSVEEVA
EYLTNFRADNIVKDAEFIRIRLVPDAGPWTVLGQGYLLVMPLLVLASYGGFCAVTYLSFAPQGLKQVLLTGGTPPLGDHCTADTVYRVCSEQVICQNEKY
YERFPQDVEIVREVVEYLANAEGGGVPLPSGGFLTPKGLQTLGLSGLGSSSGFERLHYLFERAWDPIIVQGSQKQISDYFLNGFDNWLDFGTNPLYALMQ
ESIYCQGAASQWSAHRIRGEDGGKFDAIKAIEEGRPILFTGEMVFPWMFDEVFSLKKYKEVAQLLAEKNDWPALYDTDVLSRNKVPVAAAVYYDDMYVNF
KVAKETASKIAGIRVWITNEYMHSGLRDGGGQVLDQLLGMLNGKKPLF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61540 alpha/beta-Hydrolases superfam... Lus10010141
[exp]
0 1
AT5G42670 Agenet domain-containing prote... Lus10011444
[exp]
4.8 0.8018
AT5G49210 unknown protein Lus10037138
[exp]
6.5 0.8404
AT1G17030 unknown protein Lus10024442
[exp]
9.2 0.8211
AT2G36130 Cyclophilin-like peptidyl-prol... Lus10017010
[exp]
13.0 0.8383
AT2G32080 PUR ALPHA-1, PU... purin-rich alpha 1 (.1.2) Lus10001782
[exp]
16.0 0.8411
AT5G37720 DIP2, ALY4 interacting with DNA-binding d... Lus10010982
[exp]
17.0 0.8014
AT5G05610 Alfin AL1 alfin-like 1 (.1.2) Lus10028280
[exp]
17.4 0.8059
AT5G20570 HRT1, ROC1, RBX... REGULATOR OF CULLINS-1, RING-b... Lus10008115
[exp]
22.0 0.7547
AT3G22480 PDF2 prefoldin 2 (.1.2) Lus10006117
[exp]
30.0 0.8212
AT4G30820 cyclin-dependent kinase-activa... Lus10024924
[exp]
31.4 0.7908

Lus10010141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.