Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61530 560 / 0 PANB2 Phosphoenolpyruvate carboxylase family protein (.1.2) AT2G46110 558 / 0 PANB1, KPHMT1 ketopantoate hydroxymethyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001878 [exp] 288 / 5e-98 AT2G46110 227 / 1e-74 ketopantoate hydroxymethyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G090500 [exp] 561 / 0 AT2G46110 579 / 0.0 ketopantoate hydroxymethyltransferase 1 (.1) Potri.002G164601 [exp] 73 / 1e-15 AT3G61530 92 / 7e-23 Phosphoenolpyruvate carboxylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF02548 [flax] [poplar] Pantoate_transf Ketopantoate hydroxymethyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010142 pacid=23158911 polypeptide=Lus10010142 locus=Lus10010142.g ID=Lus10010142.BGIv1.0 annot-version=v1.0 ATGGCGTTTCTCACCAAACTCTCCCGAGTATCCACCGCCGCAGTCAAATCCAGCCACCTCCTCTCCAGTCTCCGTTGGTTTAGCAATGTCCCCGAAAACA CCGTCTACGGTGGGCCACAGCACCAAAACCCTAACCAGAGAGTCACCTTAACAAATTTGCGGCAGAAGCACAAGAAAGGAGAACCAATCACCGTTGTCAC CGCTTACGACTATCCGGCCGCAGTCCACGTCGATGCCGCCGGAATCGACGTTTGCTTGGTCGGAGACTCTGCCGCAATGGTCGTCCACGGCCACGACACC ACTCTCCCTATCTCCCTTGAGGAAATGCTCGTTCACTGCCGTGCCGTCGCCCGCGGAGCCAAACGCCCTCTCCTCGTCGGAGACTTGCCCTTCGGGACCT ACGAATCAAGCGACATTCAGGCTGTTGATACAGCGGTTCGAATTCTAAAGGAAGGAGGGATGGATGCAATTAAGTTAGAGGGAGGATCCCCGTCGAGGAT TACGGCGGCGAAGGCGATTGTTGAGGCCGGCATTGCCGTTATAGGACACGTAGGACTCACTCCTCAGGCCATTAGTGTTCTTGGGGGATTCAGGGCGCAA GGAAGAAACATTGCTAGCGCTGTTCAGGTTGTGGAGACGGCATTAGCTCTACAGGAAGCAGGCTGTTTCTCTGTTGTTCTGGAATGTGTCCCTCCGCAAG TGGCTGCTGCCACTACATCTGCTCTGAAAATCCCTACTATTGGCATTGGGGCAGGCCCTTTCTGCAGTGGCCAGGTGCTGGTGTACCACGATCTTTTGGG GATGATGCAGCATCCGCACCATGCAAAGGTAACCCCCAAGTTCTGCAAACAGTATGCTCACGTCGGAGACGTGATTAACAAAGCACTAGTCGAATACAAA GAAGAAGTGAGCAGTGGTTCGTTCCCTGGTCCAGGCCACAGCCCATACAAAATATCAGAAGCTGATCTGAGTGGCTTTGTGGACCAACTGCAGAAGCTGG GTTTAGACCAGGCAGCATCTTCAGCAGCTGAGGCATCTCACAAGTTATTGGCATCCCGTGACTGA
AA sequence Show only first row Show all	>Lus10010142 pacid=23158911 polypeptide=Lus10010142 locus=Lus10010142.g ID=Lus10010142.BGIv1.0 annot-version=v1.0 MAFLTKLSRVSTAAVKSSHLLSSLRWFSNVPENTVYGGPQHQNPNQRVTLTNLRQKHKKGEPITVVTAYDYPAAVHVDAAGIDVCLVGDSAAMVVHGHDT TLPISLEEMLVHCRAVARGAKRPLLVGDLPFGTYESSDIQAVDTAVRILKEGGMDAIKLEGGSPSRITAAKAIVEAGIAVIGHVGLTPQAISVLGGFRAQ GRNIASAVQVVETALALQEAGCFSVVLECVPPQVAAATTSALKIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQYAHVGDVINKALVEYK EEVSSGSFPGPGHSPYKISEADLSGFVDQLQKLGLDQAASSAAEASHKLLASRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61530		PANB2	Phosphoenolpyruvate carboxylas...		Lus10010142 [exp]	0	1
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015778 [exp]	2.0	0.8675
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	3.0	0.8637
AT1G08530			unknown protein		Lus10021985 [exp]	6.2	0.8102
AT3G20390			endoribonuclease L-PSP family ...		Lus10040074 [exp]	7.4	0.8602
AT5G09995			unknown protein		Lus10016816 [exp]	7.7	0.8652
AT5G23070			Thymidine kinase (.1)		Lus10039055 [exp]	9.8	0.8293
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10018347 [exp]	12.4	0.8155
AT4G29830		VIP3	vernalization independence 3, ...		Lus10021571 [exp]	13.3	0.8617
AT3G10070		TAF12, TAFII58	TATA-ASSOCIATED FACTOR II 58, ...		Lus10003250 [exp]	16.8	0.8568
AT2G35790			unknown protein		Lus10040379 [exp]	17.3	0.8458

Compare expression of checked genes

Lus10010142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.