Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36800 247 / 1e-84 RCE1 RUB1 conjugating enzyme 1 (.1.2) AT2G18600 244 / 1e-83 Ubiquitin-conjugating enzyme family protein (.1) AT5G41700 103 / 1e-28 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT3G08700 102 / 4e-28 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT3G08690 101 / 1e-27 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G53300 100 / 2e-27 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G56150 100 / 3e-27 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT1G64230 99 / 8e-27 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT4G27960 99 / 8e-27 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT2G16740 99 / 1e-26 UBC29 ubiquitin-conjugating enzyme 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026038 [exp] 250 / 8e-86 AT4G36800 341 / 1e-121 RUB1 conjugating enzyme 1 (.1.2) Lus10014329 [exp] 251 / 2e-85 AT4G36800 332 / 3e-117 RUB1 conjugating enzyme 1 (.1.2) Lus10032352 [exp] 98 / 2e-26 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10028700 [exp] 98 / 3e-26 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 98 / 3e-26 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10027846 [exp] 98 / 3e-26 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10027570 [exp] 97 / 4e-26 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 97 / 4e-26 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 97 / 4e-26 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125904 [exp] 248 / 6e-85 AT4G36800 332 / 5e-118 RUB1 conjugating enzyme 1 (.1.2) Potri.009G113045 [exp] 248 / 6e-85 AT4G36800 332 / 5e-118 RUB1 conjugating enzyme 1 (.1.2) Potri.007G030900 [exp] 247 / 8e-85 AT4G36800 340 / 2e-121 RUB1 conjugating enzyme 1 (.1.2) Potri.005G126500 [exp] 239 / 1e-81 AT4G36800 332 / 3e-118 RUB1 conjugating enzyme 1 (.1.2) Potri.014G041532 [exp] 119 / 8e-35 AT4G36800 137 / 5e-42 RUB1 conjugating enzyme 1 (.1.2) Potri.019G083800 [exp] 101 / 1e-27 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.019G131400 [exp] 100 / 2e-27 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.011G168200 [exp] 100 / 4e-27 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.016G138900 [exp] 100 / 4e-27 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.003G136200 [exp] 99 / 6e-27 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10010143 pacid=23158872 polypeptide=Lus10010143 locus=Lus10010143.g ID=Lus10010143.BGIv1.0 annot-version=v1.0 ATGATTCGTTTGTTCAAAGTGAAGGAACAGCAGCAGAAAGAACAAGCTGAAAGCGCCATCAACAACAACAGGGCGAAAAAGCAAAGCTCCGGAGAGATCC GTTTTCACAAGGACATCTCAGAGCTGAACCTGCCAGAGGCATGCACAATAAATTTCCCCAACGGCAAAGACAACCTCATGAACTTTACGATCTCGATTAA ACCAGCCGAAGGTTACTACAAGGGCGGAGGCTTCACATTCTCGTTCGAAGTTTCGCATGCTTACCCGCACGAAGCCCCGAAAGTTAAGTGTACGACCAAG GTCTACCACCCCAACATCGACTGGGAAGGGAAAGTTTGTCTCAACGTGCTGCGAGAAGACTGGAAGCCTGTGCTCAACATTAATACTGTCATCTACGGAC TGTTTTATCTTCTTACAGATCCGAACCCTGAGGATCCTCTTAACCAAGAAGCTGCTGATCTGTTGAGGAAGGATCCCGGGAAGTTCGAGTCCAAGGTTAG AAGGGCTATGACTGGACGGGAATGGTAG
AA sequence Show only first row Show all	>Lus10010143 pacid=23158872 polypeptide=Lus10010143 locus=Lus10010143.g ID=Lus10010143.BGIv1.0 annot-version=v1.0 MIRLFKVKEQQQKEQAESAINNNRAKKQSSGEIRFHKDISELNLPEACTINFPNGKDNLMNFTISIKPAEGYYKGGGFTFSFEVSHAYPHEAPKVKCTTK VYHPNIDWEGKVCLNVLREDWKPVLNINTVIYGLFYLLTDPNPEDPLNQEAADLLRKDPGKFESKVRRAMTGREW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10010143 [exp]	0	1
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015287 [exp]	3.3	0.8859
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	8.8	0.8679
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10006778 [exp]	10.2	0.8695
AT2G02130		PDF2.3, LCR68	low-molecular-weight cysteine-...		Lus10004289 [exp]	10.6	0.8750
AT4G01410			Late embryogenesis abundant (L...		Lus10030193 [exp]	11.1	0.8735
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10042005 [exp]	13.0	0.8601
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10024069 [exp]	17.3	0.8533
AT5G23980		FRO2, ATFRO4, F...	ferric reduction oxidase 4 (.1...		Lus10014957 [exp]	21.1	0.8695
AT3G01860			unknown protein		Lus10041572 [exp]	21.5	0.8374
AT5G20700			Protein of unknown function (D...		Lus10027595 [exp]	22.6	0.8461

Compare expression of checked genes

Lus10010143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.