Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20180 252 / 9e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G49070 104 / 3e-24 Protein of unknown function (DUF677) (.1) AT3G19250 57 / 9e-09 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017348 [exp] 640 / 0 AT1G20180 255 / 4e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10005612 [exp] 434 / 4e-151 AT1G20180 268 / 1e-86 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017286 [exp] 431 / 5e-150 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10039258 [exp] 84 / 2e-18 AT3G49070 168 / 1e-50 Protein of unknown function (DUF677) (.1) Lus10031977 [exp] 71 / 5e-13 AT3G19330 284 / 2e-93 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10035125 [exp] 62 / 4e-11 AT3G19330 183 / 1e-56 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10028573 [exp] 56 / 1e-08 AT3G49070 102 / 4e-25 Protein of unknown function (DUF677) (.1) Lus10018879 [exp] 44 / 9e-06 AT3G49070 56 / 2e-10 Protein of unknown function (DUF677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G243800 [exp] 306 / 9e-101 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G018200 [exp] 305 / 3e-100 AT1G20180 288 / 2e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G193000 [exp] 140 / 1e-37 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.002G067300 [exp] 134 / 2e-35 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.015G147400 [exp] 94 / 7e-21 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.010G240200 [exp] 59 / 2e-09 AT3G19330 311 / 9e-104 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Potri.005G127401 [exp] 45 / 0.0001 AT2G18630 339 / 2e-114 Protein of unknown function (DUF677) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05055 [flax] [poplar] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Lus10010144 pacid=23154179 polypeptide=Lus10010144 locus=Lus10010144.g ID=Lus10010144.BGIv1.0 annot-version=v1.0 ATGACGAAGCTTTCATGCTCAAAGCTGCGATCTTTCCTCTTCCAAAAAGAGAGATCGCAGAAAAATGGAACATCGTCGGGTAGCTTGAGCAACAAGCTAA CGGTGAATGAGGAGTACAAGGAAGCGTTTCGGACTCAGTCTTATGTGGAAATGTGGACGGAACTCCAATCCAAGTTAATTGAGCGCCGGAATTCTTCTTC TACTACTACATCTTCATCATCTGGATTATCACCTTCATCGTCAGTGTCTCATCTCTCCGATTATCTGTTCCGGCCACCTCCGGAACAAGAAACTATCTCA CAATTGGTTCAGAAATTTGGATGTTGTGATACCCTGTTAATCGAATACTTTGAATCGAGCTTGGTAGCATGCGACATCTGCGAAATGCTGCTCCGGTCGG TCCATTCGACTCGGGCCCACTACAATAAGCTCAAGAGGGTGATCAAGTTAGCTAAGCAAGTGAAATTATGCGAGGATGACTCGTCGTATAATTTCACTAG CAAGGTCTTTGCAGCAATGTATAGAGACCTTGCCGAGTATGCACTGCATACAAACCCTTTATCATCGTTACTCGAACCGGTCCGATTCGAGAAAATCCAC GACAGCAACTCTGCATTGCTTTGTGAATTGACTGGAAAAAGGAGGAACATCATGCGCCGAGCTAAGCTGAACAAAATCCTGAAGAGAGTCGGAAGGTGTA CCGTAGTCATTCTCCACACGACACTAATGGTCACACTATTGGTGATTGCCCTCCACAGCTTGGCCGGGATCTTAGTGGTCCCGGCCGTGATTAGCTGCTT CGGAGGTTTCTTGACACGCAAGAAATCTAAGCAAGCTAGCTACAGAGGTGTCTTATCTCACAAGCAACCTAAGCAAGCTGGTTTCAGAGGTTGCTTATCG CACAAGAAACCCAAGCAAGCAGTTGTGTGTGCATCAGCCTCGACGGATCCATCGAGGCTCTGCACGCAGCTTGACATAGCGGCGAAGGGGATGTTCTTCT TGATCAACGATTTCGACAGCATCAGCCGACTGGTGACAAGCCTGAGCAACGAGGTCGAGCACAGGAAGGTGCTCGCCGGGATGTGTGTTAGGAGCAAGAA TGGAGAGCTTTTAAAGCAGGTGGTGAAGGAGCTTTGTGCATACGATGATTGTTACGCAGAGCAGCTGGATGAGCTTGAAGAACATGTGTACTTGTGCTTC CACACCATTAACAGATCTCGAAGGTTCTTATTGCAAGAGTTGATGAAGGAGGAGGACTATAAGGGTTTTGATGATGATGATGATGTTGGTAGTGCAGATA ACAACTGA
AA sequence Show only first row Show all	>Lus10010144 pacid=23154179 polypeptide=Lus10010144 locus=Lus10010144.g ID=Lus10010144.BGIv1.0 annot-version=v1.0 MTKLSCSKLRSFLFQKERSQKNGTSSGSLSNKLTVNEEYKEAFRTQSYVEMWTELQSKLIERRNSSSTTTSSSSGLSPSSSVSHLSDYLFRPPPEQETIS QLVQKFGCCDTLLIEYFESSLVACDICEMLLRSVHSTRAHYNKLKRVIKLAKQVKLCEDDSSYNFTSKVFAAMYRDLAEYALHTNPLSSLLEPVRFEKIH DSNSALLCELTGKRRNIMRRAKLNKILKRVGRCTVVILHTTLMVTLLVIALHSLAGILVVPAVISCFGGFLTRKKSKQASYRGVLSHKQPKQAGFRGCLS HKKPKQAVVCASASTDPSRLCTQLDIAAKGMFFLINDFDSISRLVTSLSNEVEHRKVLAGMCVRSKNGELLKQVVKELCAYDDCYAEQLDELEEHVYLCF HTINRSRRFLLQELMKEEDYKGFDDDDDVGSADNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20180			Protein of unknown function (D...		Lus10010144 [exp]	0	1
AT5G46060			Protein of unknown function, D...		Lus10013943 [exp]	2.4	0.9630
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10013674 [exp]	4.0	0.9529
AT5G46060			Protein of unknown function, D...		Lus10005266 [exp]	5.5	0.9405
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037661 [exp]	10.6	0.9131
AT3G61930			unknown protein		Lus10030203 [exp]	13.4	0.9071
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	14.8	0.9339
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	15.5	0.9385
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10014588 [exp]	18.7	0.9164
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	22.0	0.9308
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10008968 [exp]	25.0	0.9046

Compare expression of checked genes

Lus10010144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.