Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32990 270 / 2e-92 PRPL11 plastid ribosomal protein l11 (.1) AT5G51610 139 / 2e-41 Ribosomal protein L11 family protein (.1) AT4G35490 103 / 7e-28 MRPL11 mitochondrial ribosomal protein L11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017349 [exp] 341 / 2e-120 AT1G32990 306 / 6e-107 plastid ribosomal protein l11 (.1) Lus10035432 [exp] 100 / 1e-26 AT4G35490 272 / 2e-95 mitochondrial ribosomal protein L11 (.1) Lus10031045 [exp] 97 / 3e-25 AT4G35490 261 / 4e-91 mitochondrial ribosomal protein L11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G450800 [exp] 267 / 3e-91 AT1G32990 308 / 4e-107 plastid ribosomal protein l11 (.1) Potri.011G150700 [exp] 267 / 4e-91 AT1G32990 303 / 3e-105 plastid ribosomal protein l11 (.1) Potri.007G058600 [exp] 104 / 4e-28 AT4G35490 239 / 2e-82 mitochondrial ribosomal protein L11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03946 [flax] [poplar] Ribosomal_L11_N Ribosomal protein L11, N-terminal domain PF00298 [flax] [poplar] Ribosomal_L11 Ribosomal protein L11, RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10010145 pacid=23154185 polypeptide=Lus10010145 locus=Lus10010145.g ID=Lus10010145.BGIv1.0 annot-version=v1.0 ATGGCTACCACCTCCATCTCCACCGCATTATCTTCTCATCTCTGCAACACAAACAAGCTGTCATCGTCATCTCCGTTTGCCGCCGGCATCAGCAGCTTGT CTTCCCACCCTTCCCCGTCCCTTCAATTCTTCCGCACTGTACCTCTCAGGAGCTTCTCCGTCAGAGCAATGGCTCCCCCGAAACCCGCCGGCGGCAAGGC CAAGAAAGTGGTGGGAATCATTAAGTTGGCTCTGGAGGCCGGAAAGGCTACTCCGGCGCCTCCAGTTGGTCCGGCGCTGGGTTCAAAAGGTGTCAACATT ATGGCCTTCTGCAAGGATTACAATGCACGAACTGCTGACAAAGCTGGATATGTTATCCCTGTCGAGATTACTGTCTTCGATGATAAGAGCTTCACTTTTA TTCTCAAGACTCCTCCTGCTTCAGTTCTTTTGCTCAAGGCCGCAGGAGCGGAGAAAGGTTCCAAGGACCCTAAGAACGAGAAAGTGGGCGTGATCACGAT CGATCAACTCCGGACAGTCGCAACCGAAAAGCTACCAGACTTGAACTGCACCACCATTGAATCTGCGATGAGAATCATAGCCGGAACAGCAGCTAACATG GGGATCGATATCGATCCGCCTATTCTAACTCCCAAAGTAAAGGAGGAGTTGTTGTATTAG
AA sequence Show only first row Show all	>Lus10010145 pacid=23154185 polypeptide=Lus10010145 locus=Lus10010145.g ID=Lus10010145.BGIv1.0 annot-version=v1.0 MATTSISTALSSHLCNTNKLSSSSPFAAGISSLSSHPSPSLQFFRTVPLRSFSVRAMAPPKPAGGKAKKVVGIIKLALEAGKATPAPPVGPALGSKGVNI MAFCKDYNARTADKAGYVIPVEITVFDDKSFTFILKTPPASVLLLKAAGAEKGSKDPKNEKVGVITIDQLRTVATEKLPDLNCTTIESAMRIIAGTAANM GIDIDPPILTPKVKEELLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	0	1
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	1.4	0.9629
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002394 [exp]	2.0	0.9594
AT4G01310			Ribosomal L5P family protein (...		Lus10036390 [exp]	2.0	0.9626
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Lus10009197 [exp]	2.4	0.9585
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10017349 [exp]	3.5	0.9416
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	4.2	0.9598
AT4G26370			antitermination NusB domain-co...		Lus10013400 [exp]	5.7	0.9466
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	5.7	0.9558
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	5.8	0.9378
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	6.3	0.9591

Compare expression of checked genes

Lus10010145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.