Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77010 659 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 337 / 9e-105 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G13600 323 / 2e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 323 / 1e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G21090 305 / 1e-94 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G68930 308 / 2e-94 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G16860 303 / 2e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 301 / 2e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62260 298 / 2e-91 MEF9 mitochondrial editing factor 9 (.1) AT3G09040 304 / 1e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016425 [exp] 316 / 6e-97 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013540 [exp] 314 / 3e-96 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 308 / 4e-93 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030249 [exp] 303 / 6e-93 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 300 / 4e-90 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 299 / 4e-90 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 305 / 7e-90 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038400 [exp] 299 / 1e-89 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 293 / 1e-89 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G075200 [exp] 855 / 0 AT1G77010 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 347 / 1e-108 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G048800 [exp] 335 / 4e-104 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 331 / 4e-103 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G245300 [exp] 319 / 1e-97 AT3G22690 570 / 0.0 unknown protein Potri.012G018800 [exp] 310 / 5e-94 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 307 / 7e-93 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G019900 [exp] 303 / 2e-92 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 308 / 3e-92 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G012500 [exp] 301 / 4e-92 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10010146 pacid=23154204 polypeptide=Lus10010146 locus=Lus10010146.g ID=Lus10010146.BGIv1.0 annot-version=v1.0 ATGGATGCCGAGGTCCATTCTCTGGCTCGCTTACTCCAGTCTTTTACTACCCCTCGCTCAATCCGTCAAGGCAAGCAACTCCACTGCCTCTTCTTCAAAA AGGGCGTCTTGAACTCAACCGTATCTCTCGCTAACAGGATTCTCCAGATGTACTCTAGGTGTGGTTGCTTGACCGACGCTCACAAGCTGTTCGACGAAAT GACTTACCGAAACTGCTTCTCCTGGAACACTATTATAGAAGGGTATATGAAAGCCGGAGACAAAAGGAAGTCGCTGGAATTGTTTGATTCAATTCCCTGT AAGAACGATTACACTTGGAATGTGGTAGTTTCTGGATTGGCTAAATTCGGTGATGATGTTGTAACTGCCAGGAAATTGTTTGAACAGATGCCTAGGAAGG ATTCGGTTGCTTCGAACTCCCTGATTCATTGTTATGTTCAGAATGGTCGATCCGACGAAGCTGTTAAATTGTTTAGGGCATTGAGTCTGGATCCTTGTGA AGAATCAAAATCAAGCATTGATGAATTTGTGTTAGCTACTGTGATCGGAGCTTGCACTAACCTCGGAGCTGTTAATTGCGGCAAGCAAATTCACGCTAGG ATTCTGAGCCATGGTGTAGAGCTTGATCCAGTGATGGCTAGCTCACTGACCAACCTTTATGCAAAATGTGGCGATTTCGACAGTGCGAGTTTCGTTCTGA ACACTGACAATTTCTCTCTGTCTGCATTGGTCTCCGGATATGCAAATGCTGGAAGATTCGTAGATGCTCGGAGACTACTCGACCGGACGAGTAGTCAAAG TACCGTGGTTTGGAACTCGTTAATATCTGGTTGCGTTTCGAACCTTGATGGAAGTGAAGCGGTAAGATCTTTCAGTGAGATGAGGAGCAGAGGAATTCGG GTCGATTCATCCACCATTGCAAGCATCTTGAGTGCTTGTAAGCATGATTTACTACAGCTTCTTCATGCGTATTCGTGTAAAGCCGGTTTCTTGATCAACA ATGTTGTTGTTTGTTGCGCGTTAATCGATGCATACTCCAAGTGCGGAAATTCCACCGATGCGTGTGAATTATTCAGCGAGATCGAAGTTTTTGACACGGT GTTATTGAACTCCATGATAACTGTGTACAGCAAATGCGGTAGAATAGAAGATTCCAAACGTATCTTTAAGACAATGCCTTTTGAAGAAAAAAGCTTGATA TCTTGGAATTCGATGGTCGTGGCTTTGAGTAAGAACGGCTGCCCGATCGAGTCCTTAGATACTTTCCGCGAAATGAACCGGTTCGGTTTGAGGTCGGACG AGTTCAGTCTCGCTAGTGTGGTTAGTGCTTGTGCTGCTGTTTCCTGCGTAGAATTCGGAGAACAGGTGTTCGCTCGAGCAACTAGGATCGGCCTCGAATC GAATCCTGCTGTTTCCACTTCACTGATAGATTTCTACTGCAAATGTGGCTTCGTAGGGACCGGGAGGAAGTTATTCGATGCAGTTAAGCTCGATGATGAC CCCGCGTGTTGGAACTCGATGTTGATGGGATACGCTACCAACGGACAAGGATCAGAAGCACTTTCTTTGTTCAACACAATGAGGAATCATTCCCCTGTGT GGCCAAGTAACATCACATTCACGGCAGTTCTGTCAGCTTGTGATCATTGTGGATTGGTTGACGAAGGATGGAAATGGTTTCGTGAAATGAAGGATCGATA CCATATTGATCCGGAGATCGAGCACTACTCTTGCATGATTGATCTGTTGTCTCGTGCTGGCCGGATAGAGGAAGCGATGAGACTTATTACAGATGATCAT ATGCCTTTCGAACCGGATGAGACAATGTGGTGCTCGGTTTTGAGAGGCTGTGTTGTTCATGGAGAGGATAAGCTTGGAGAAGAAATCGCGAAACGGATCA TCGAGCTTGATCCGGAGGAGAATGCTGGTAGTGCGTATATACAACTCTCTGGAATATTTGCCAAAACTGGGAAGTGGGAGAGTTCATCCTTGATCAGGAA GTTGATGCAAGAGAAGGAAATAAAGAAGGTTCCTGGTTATAGCTGGGCTGATTGA
AA sequence Show only first row Show all	>Lus10010146 pacid=23154204 polypeptide=Lus10010146 locus=Lus10010146.g ID=Lus10010146.BGIv1.0 annot-version=v1.0 MDAEVHSLARLLQSFTTPRSIRQGKQLHCLFFKKGVLNSTVSLANRILQMYSRCGCLTDAHKLFDEMTYRNCFSWNTIIEGYMKAGDKRKSLELFDSIPC KNDYTWNVVVSGLAKFGDDVVTARKLFEQMPRKDSVASNSLIHCYVQNGRSDEAVKLFRALSLDPCEESKSSIDEFVLATVIGACTNLGAVNCGKQIHAR ILSHGVELDPVMASSLTNLYAKCGDFDSASFVLNTDNFSLSALVSGYANAGRFVDARRLLDRTSSQSTVVWNSLISGCVSNLDGSEAVRSFSEMRSRGIR VDSSTIASILSACKHDLLQLLHAYSCKAGFLINNVVVCCALIDAYSKCGNSTDACELFSEIEVFDTVLLNSMITVYSKCGRIEDSKRIFKTMPFEEKSLI SWNSMVVALSKNGCPIESLDTFREMNRFGLRSDEFSLASVVSACAAVSCVEFGEQVFARATRIGLESNPAVSTSLIDFYCKCGFVGTGRKLFDAVKLDDD PACWNSMLMGYATNGQGSEALSLFNTMRNHSPVWPSNITFTAVLSACDHCGLVDEGWKWFREMKDRYHIDPEIEHYSCMIDLLSRAGRIEEAMRLITDDH MPFEPDETMWCSVLRGCVVHGEDKLGEEIAKRIIELDPEENAGSAYIQLSGIFAKTGKWESSSLIRKLMQEKEIKKVPGYSWAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77010			Pentatricopeptide repeat (PPR)...		Lus10010146 [exp]	0	1
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10040778 [exp]	3.9	0.7297
AT2G03880		REME1	required for efficiency of mit...		Lus10005642 [exp]	4.5	0.7472
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024848 [exp]	13.6	0.6213
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10033255 [exp]	26.0	0.7141
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Lus10015699 [exp]	28.0	0.7432
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	42.0	0.6718
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10003505 [exp]	44.1	0.6978
					Lus10037427 [exp]	51.1	0.6701
					Lus10000543 [exp]	60.3	0.6611
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10028054 [exp]	69.3	0.6924

Compare expression of checked genes

Lus10010146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.