Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18196 165 / 9e-52 Heavy metal transport/detoxification superfamily protein (.1) AT4G10465 153 / 3e-47 Heavy metal transport/detoxification superfamily protein (.1) AT1G61570 88 / 6e-23 TIM13 translocase of the inner mitochondrial membrane 13 (.1) AT1G06330 88 / 4e-22 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 84 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 76 / 2e-17 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT1G22990 69 / 6e-15 HIPP22 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) AT1G29100 69 / 7e-15 Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 68 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1) AT5G17450 66 / 4e-14 HIPP21 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008284 [exp] 176 / 6e-56 AT2G18196 246 / 4e-84 Heavy metal transport/detoxification superfamily protein (.1) Lus10033250 [exp] 176 / 6e-56 AT2G18196 251 / 3e-86 Heavy metal transport/detoxification superfamily protein (.1) Lus10017352 [exp] 129 / 1e-38 AT1G61570 92 / 6e-26 translocase of the inner mitochondrial membrane 13 (.1) Lus10001892 [exp] 89 / 4e-22 AT1G06330 101 / 1e-27 Heavy metal transport/detoxification superfamily protein (.1) Lus10020704 [exp] 87 / 2e-21 AT1G06330 173 / 3e-56 Heavy metal transport/detoxification superfamily protein (.1) Lus10013911 [exp] 85 / 2e-20 AT1G06330 103 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1) Lus10042946 [exp] 72 / 6e-16 AT1G71050 196 / 3e-65 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10022508 [exp] 72 / 8e-16 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1) Lus10016812 [exp] 72 / 8e-16 AT4G39700 181 / 3e-59 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G452400 [exp] 176 / 2e-56 AT2G18196 256 / 3e-88 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G149500 [exp] 172 / 8e-55 AT2G18196 257 / 9e-89 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G024800 [exp] 107 / 1e-29 AT3G56891 167 / 5e-54 Heavy metal transport/detoxification superfamily protein (.1) Potri.011G065600 [exp] 105 / 8e-29 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.001G452100 [exp] 100 / 7e-28 AT1G61570 76 / 2e-19 translocase of the inner mitochondrial membrane 13 (.1) Potri.011G149800 [exp] 100 / 2e-27 AT1G61570 77 / 3e-20 translocase of the inner mitochondrial membrane 13 (.1) Potri.019G106500 [exp] 91 / 3e-23 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G107500 [exp] 87 / 8e-22 AT1G06330 213 / 5e-72 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G056800 [exp] 82 / 7e-20 AT1G06330 147 / 4e-46 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114600 [exp] 76 / 2e-17 AT1G22990 194 / 9e-65 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain PF02953 [flax] [poplar] zf-Tim10_DDP Tim10/DDP family zinc finger
Representative CDS sequence Show only first row Show all	>Lus10010147 pacid=23154180 polypeptide=Lus10010147 locus=Lus10010147.g ID=Lus10010147.BGIv1.0 annot-version=v1.0 ATGTGCTGCAATGGCTGCGAGAGAGTTGTAAAGAAAGCCATTCGCAAGCTCAGAGGGGTTGATTCGGTGGAGGTGGAGTTGGAGATGGAGAAAGTGACGG TGGTCGGCTACGTGGAACGGAACAAGGTGCTCAAGGCGGTTAGAAGATCCGGAAAGAGAGCCGAGTTCTGGCCGTACCCGAATCCGCCTCTCTTCTTCAC GTCGGCCGAAGATTACTTCAAGGACACGGCAAACGAGTTCAAGGAGAGCTACAACTACTACCGCCACGGCTACAACAAAGCGGAAGCGGAAGAAGAGCCG AGCAAACGAGCTTACAGCCAGAGAGAGAGAGAGAGAGAGATCGATACAGAGCTATCAGCGATGGATTTCTCCCAACCAGGACACAGTAGTTCAAACATAT CTTCGGAGGATTTCAAGGATCAGTTCAAGACTCAACTCGCCCAGGCCTACGCCCAAGAATTCCTCGAGACATTGGGAACGAAGTGTTTCGACAAGTGCGT GACGAAGCCGGGATCGAGCCTGAGCGGGAGCGAAAGCAGCTGTGTCTCCAGGTGTGTGGATCGCTACATCGAAGCCACTGGCTTAGTTAGCAGAGCTCTC TTTAACGCTCCCCGCTGA
AA sequence Show only first row Show all	>Lus10010147 pacid=23154180 polypeptide=Lus10010147 locus=Lus10010147.g ID=Lus10010147.BGIv1.0 annot-version=v1.0 MCCNGCERVVKKAIRKLRGVDSVEVELEMEKVTVVGYVERNKVLKAVRRSGKRAEFWPYPNPPLFFTSAEDYFKDTANEFKESYNYYRHGYNKAEAEEEP SKRAYSQREREREIDTELSAMDFSQPGHSSSNISSEDFKDQFKTQLAQAYAQEFLETLGTKCFDKCVTKPGSSLSGSESSCVSRCVDRYIEATGLVSRAL FNAPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18196			Heavy metal transport/detoxifi...		Lus10010147 [exp]	0	1
AT3G23390			Zinc-binding ribosomal protein...		Lus10040983 [exp]	2.2	0.9068
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	4.0	0.8973
AT5G60340			P-loop containing nucleoside t...		Lus10016525 [exp]	4.2	0.8282
AT3G23390			Zinc-binding ribosomal protein...		Lus10013436 [exp]	4.9	0.8947
AT3G53740			Ribosomal protein L36e family ...		Lus10016501 [exp]	5.3	0.8897
AT5G60340			P-loop containing nucleoside t...		Lus10040792 [exp]	5.3	0.8380
AT3G47120	C3HZnF		RNA recognition motif (RRM)-co...		Lus10018227 [exp]	5.7	0.8472
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10040122 [exp]	6.3	0.8626
AT3G52040			unknown protein		Lus10039586 [exp]	6.9	0.8674
AT5G65860			ankyrin repeat family protein ...		Lus10032850 [exp]	7.0	0.8650

Compare expression of checked genes

Lus10010147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.