Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35580 323 / 7e-104 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 313 / 2e-98 NAC ANAC014 NAC 014 (.1.2) AT3G49530 254 / 3e-78 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT5G24590 245 / 8e-75 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT3G17730 203 / 2e-61 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G17260 210 / 3e-61 NAC ANAC086 NAC domain containing protein 86 (.1) AT1G65910 209 / 8e-60 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G03200 204 / 4e-59 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G46590 194 / 2e-57 NAC ANAC096 NAC domain containing protein 96 (.1) AT4G17980 183 / 9e-54 NAC ANAC071 NAC domain containing protein 71 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017353 [exp] 714 / 0 AT4G35580 245 / 7e-75 NAC transcription factor-like 9 (.1.2.3) Lus10033251 [exp] 506 / 2e-174 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 494 / 7e-170 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10015587 [exp] 252 / 2e-76 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10032919 [exp] 251 / 4e-76 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10042284 [exp] 204 / 8e-61 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 203 / 1e-60 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 208 / 8e-59 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 208 / 1e-57 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G149300 [exp] 379 / 2e-123 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.001G452700 [exp] 357 / 2e-115 AT1G33060 415 / 7e-137 NAC 014 (.1.2) Potri.012G007500 [exp] 265 / 2e-80 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.015G004100 [exp] 254 / 6e-77 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.015G030200 [exp] 197 / 3e-59 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.010G174600 [exp] 198 / 2e-58 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.017G139500 [exp] 201 / 2e-56 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.008G081500 [exp] 193 / 2e-56 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.012G038100 [exp] 191 / 2e-56 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.003G089800 [exp] 192 / 6e-56 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10010148 pacid=23154186 polypeptide=Lus10010148 locus=Lus10010148.g ID=Lus10010148.BGIv1.0 annot-version=v1.0 ATGTCGGCTCTGGCGGTGCAATCGCTTCCACTGGGCTACCGATTCCAGCCAACTGACGAGGAGCTCATCAATCACTACCTCAGGTTGAAGATCAACGGCC GCGATTCCGAAGTCGACGCCGTCCCTGAAATCGACGTCTGCAAATGGGAGCCTTGGGATCTTCCCGGTCTATCCGTAATCAAGACGAATGATCCGGAGTG GTTTTTCTTCTGCCCTCGCGACCGCAAGTATCCAAACGGGCACCGTTCCAATCGAGCGACCGAAGCTGGATACTGGAAAGCTACGGGTAAGGACAGGACG ATCAAGTCCAGAAGGGCCGGATTTAGCCCAAAATCGATCGGGATGAAGAAGACATTAGTCTTCTACAAGGGACGTGCTCCGAGAGGTGAGCGATCTAACT GGATTATGCACGAGTACCGCGCCACTGAGGAAGATATCGTTGGTACTGCGCCTGGGCAGGCTGCTTTCGTTCTTTGTCGCTTGTTTCGAAAGCCTGAGAT CGGTGCATCACCTGCAGCGAAATGTGATGAAATGGAGGAGCAGACTGCAAATTCTTCTGGTATGGATTTAGGGAAACAATCCGATGGTGTGGTACCTGCT GATAGCAATAGTTACATGAATTCGGATGTAGAAGATCTTACTATGGAGGCAAACGGAGCATCGGATTACAAAGAGTTCTCTTATGGAGATCTAGGTCGGC TAAGTGGGGGGGATTTTCATTATTATGACAATGACTTTGGTAATGAGTTTAACAGTTTTCTGGATGGCATGAGTGAACAGGATGCATATCTCACTGATTT GCTGGACGAGGTGTTCCATAATCATGGTGGTGAGTTGTCTTTCGAGGAAGCCGCCAGTAGAATGGACAGAGAGTCGATGCTTGAGGATTTCAATGCAGAT GACTGTAATATATACAGCAGCGTGGCTGCTAAAATGACTCAACAAGAACAGACCGGAACTGCTTATGAACAGTGTTTTGCTCAAGCACCGTTCTTTAACA GAGAAGTTAGAAGCATGAATCACCGCGATACTTTTGTTAGGCAAGATGCTTATTTTGCGGATCCTTTCACAAATACATCCTTTGGGATGTTCCACCCTGT GGAGAACTATGTAAGCTTTGACAACAATGTTGGTGGCGGAACTGGAATCAAGATCAGAACACGTCCACCTGAAGTTCGACCACCGTCAAAGATCTTGATT TCTCAGGGCACTGCTCTAAGGAGGCTACATTTCCAGACAAAACTTTCAAGATTGCAGTGTCGAAACTGCGTGGCTGGTGAAGATGCAGTGCAATGTTCAG TAACCAAGAACCAGGATGCTGAGGAATACGATCCAACTCCCGACGAGCAACCGAAACAAGGCTGGGTGGACAAGCTCAGGAGAAAGATAGGGAGAACCCT GAGTGAATTACACAGTTTTAAGGGGATCAAGGGTTCATCAGCAGCAGTTGCAAATGCAGGTGTTGGCGGTTCTGAATCAGCTTGGATGATTGGCATAACG GGAGCAGCCTTTCTGGTGGCGGGTACTGCAAGGGTCACGATAAAGCTTGCTGCTTTTGATTGCTGGGGGGAGATGATACTTGTAGCTGTTCTAACGGAGC TTCTGGAAGAGTACACGGCGTTGGTAGCGAGGGTGCTTGAGCACTTGGTGAACGACGCCCCTTTCCCTCGCCGGGTCCGCTTCCTCATCCTCCGCCGCCT CCCTTTCTCCTCTTCTCATCCGCACTGA
AA sequence Show only first row Show all	>Lus10010148 pacid=23154186 polypeptide=Lus10010148 locus=Lus10010148.g ID=Lus10010148.BGIv1.0 annot-version=v1.0 MSALAVQSLPLGYRFQPTDEELINHYLRLKINGRDSEVDAVPEIDVCKWEPWDLPGLSVIKTNDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDRT IKSRRAGFSPKSIGMKKTLVFYKGRAPRGERSNWIMHEYRATEEDIVGTAPGQAAFVLCRLFRKPEIGASPAAKCDEMEEQTANSSGMDLGKQSDGVVPA DSNSYMNSDVEDLTMEANGASDYKEFSYGDLGRLSGGDFHYYDNDFGNEFNSFLDGMSEQDAYLTDLLDEVFHNHGGELSFEEAASRMDRESMLEDFNAD DCNIYSSVAAKMTQQEQTGTAYEQCFAQAPFFNREVRSMNHRDTFVRQDAYFADPFTNTSFGMFHPVENYVSFDNNVGGGTGIKIRTRPPEVRPPSKILI SQGTALRRLHFQTKLSRLQCRNCVAGEDAVQCSVTKNQDAEEYDPTPDEQPKQGWVDKLRRKIGRTLSELHSFKGIKGSSAAVANAGVGGSESAWMIGIT GAAFLVAGTARVTIKLAAFDCWGEMILVAVLTELLEEYTALVARVLEHLVNDAPFPRRVRFLILRRLPFSSSHPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10010148 [exp]	0	1
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	3.2	0.8694
AT1G23965			unknown protein		Lus10030641 [exp]	6.3	0.8599
AT1G71680			Transmembrane amino acid trans...		Lus10008263 [exp]	7.5	0.8565
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10004774 [exp]	11.0	0.8089
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	13.0	0.8021
AT4G29310			Protein of unknown function (D...		Lus10034991 [exp]	13.0	0.7874
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	14.5	0.7965
AT5G57970			DNA glycosylase superfamily pr...		Lus10038388 [exp]	20.7	0.7928
AT5G05090	GARP		Homeodomain-like superfamily p...		Lus10027291 [exp]	21.1	0.7715
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	21.2	0.7845

Compare expression of checked genes

Lus10010148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.