Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72680 551 / 0 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT2G21890 338 / 9e-115 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT2G21730 335 / 1e-113 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT4G37970 333 / 4e-113 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G39330 333 / 6e-113 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT4G37980 311 / 1e-104 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G37990 293 / 3e-97 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT3G19450 275 / 2e-90 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 264 / 3e-86 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT5G43940 87 / 6e-19 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017354 [exp] 716 / 0 AT1G72680 539 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Lus10005611 [exp] 320 / 1e-107 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10017285 [exp] 318 / 3e-107 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10002089 [exp] 315 / 5e-106 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10035956 [exp] 314 / 1e-105 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 310 / 4e-104 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10019811 [exp] 309 / 1e-103 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10014104 [exp] 309 / 1e-103 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10023268 [exp] 306 / 1e-102 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G148100 [exp] 591 / 0 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.011G148200 [exp] 581 / 0 AT1G72680 561 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.006G024300 [exp] 528 / 0 AT1G72680 521 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.003G196700 [exp] 514 / 0 AT1G72680 469 / 1e-166 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.016G023360 [exp] 502 / 1e-179 AT1G72680 492 / 1e-175 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.016G023300 [exp] 496 / 1e-177 AT1G72680 489 / 1e-174 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.006G024250 [exp] 483 / 4e-172 AT1G72680 452 / 4e-160 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.001G307200 [exp] 352 / 2e-120 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G078300 [exp] 336 / 3e-114 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.016G065300 [exp] 331 / 2e-112 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10010149 pacid=23154221 polypeptide=Lus10010149 locus=Lus10010149.g ID=Lus10010149.BGIv1.0 annot-version=v1.0 ATGAGTTCTGAGAATGCCAAAGAGGATTGCCTTGCATGGGCTGCGAGAGATCCGTCTGGAGTTTTGTCCCCTTACAAGTTCAGCCGTAGGGAAACAAGGG ACGATGATGTTTCCCTAAGAATAACACACTGTGGAGTATGCTATGCCGATGTTGTTTGGACTCGGAACAAACATTATGATTCCAAGTATCCGTTGGTGCC TGGGCATGAGATTGTTGGGATTGTACAAGAGGTTGGCCGCAACGTGAGCCAATTGAAACCTGGTGACCATGTTGGAGTAGGGACTTATGTTAACTCCTGC AGGGAGTGTGAGTTTTGCGATGACAGAGATGAAGTCAACTGTGTAAAAGGATCTGTTTTCACCTTTAATGGTCTTGACTCTGATGGCACCATCACCAAAG GAGGATATTCCAGCCACATTGTTGTTCATGAAAGATACTGCTACAAGATACCTGATGGATATCCTTTGGCAATGGCTGCTCCTTTGCTTTGTGCTGGAGT TACTGTTTACAATCCCATGGTTCGTCACAACATGAATCAGCCTGGTAAATCTTTGGGAGTGATCGGGCTCGGTGGGCTTGGCCACATGGCAGTGAAGTTT GGGAAGGCTTTTGGATTGAAGGTCACAATATTCAGTACGAGTGCATCCAAAAAAGAGGAAGCTTTAAGCGTCCTTGGTGCTGACAGGTTTATTGTCTCGT CAGACGAAGAACAGATGAAGGCCTTGTCGAAATCTCTGGACTTCATAATCGACACTGCATCCGGCGACCACCCATTCGATCCATACATGTCTCTTCTCAA GACTCGGGGTGTTCTTGTCCTCGTCGGTTTCCCCGGTGAAGTGAAATTCAGTCCGGCCAACCTCATTCTTGGTACGAGAACCGTGGCAGGGAGTGTAACG GGCGGAACAAAGGTGACGCAAGAGATGCTGGAGTTCTGTGCTGCAAATAAGATCTATCCGAAGACGGAGGTGATTCAGATTCAGGATGTCAACGAAGCGA TCGAGAGGCTTATCAACAGAGACGTGAAGTATCGGTTCGTGATAGATATCGAGAACTCGTTGAAGTGA
AA sequence Show only first row Show all	>Lus10010149 pacid=23154221 polypeptide=Lus10010149 locus=Lus10010149.g ID=Lus10010149.BGIv1.0 annot-version=v1.0 MSSENAKEDCLAWAARDPSGVLSPYKFSRRETRDDDVSLRITHCGVCYADVVWTRNKHYDSKYPLVPGHEIVGIVQEVGRNVSQLKPGDHVGVGTYVNSC RECEFCDDRDEVNCVKGSVFTFNGLDSDGTITKGGYSSHIVVHERYCYKIPDGYPLAMAAPLLCAGVTVYNPMVRHNMNQPGKSLGVIGLGGLGHMAVKF GKAFGLKVTIFSTSASKKEEALSVLGADRFIVSSDEEQMKALSKSLDFIIDTASGDHPFDPYMSLLKTRGVLVLVGFPGEVKFSPANLILGTRTVAGSVT GGTKVTQEMLEFCAANKIYPKTEVIQIQDVNEAIERLINRDVKYRFVIDIENSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10010149 [exp]	0	1
AT4G19140			unknown protein		Lus10023813 [exp]	4.7	0.9247
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	4.9	0.9491
AT4G19510			Disease resistance protein (TI...		Lus10002250 [exp]	6.9	0.9285
AT1G80570			RNI-like superfamily protein (...		Lus10002665 [exp]	7.2	0.9152
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	9.2	0.9372
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016955 [exp]	10.1	0.9154
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	10.8	0.9445
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	11.8	0.9348
AT4G10330			glycine-rich protein (.1)		Lus10001357 [exp]	12.7	0.9369
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	13.0	0.9280

Compare expression of checked genes

Lus10010149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.