Plant FIBer expression Database

Lus10010150 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73940 132 / 1e-39 unknown protein
AT5G49410 72 / 5e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017355
[exp]
228 / 3e-77 AT1G73940 160 / 3e-51 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G453400
[exp]
136 / 5e-41 AT1G73940 141 / 1e-43 unknown protein
Potri.005G118900
[exp]
76 / 5e-18 AT5G49410 188 / 9e-63 unknown protein
PFAM info
Representative CDS sequence
>Lus10010150 pacid=23154178 polypeptide=Lus10010150 locus=Lus10010150.g ID=Lus10010150.BGIv1.0 annot-version=v1.0
ATGGCCTGGTGGTTAACAGGCGGCGGAGGAAGCGCCGGCGGTGCGATTAAGAGTGCTTTGGTAAGGTATTTCTCCAGGGAACGCGCCGTCAATGTCAGAA
AGATAAGCCCGAAGGTTCCTTTCCCGGAAGCTTTTGCCATCTCTGAGTCACTTTACAACATCATCAAGAAGAACGGACCTCTCACCATTGGCAACACCTG
GAATCTCGCTCAGGTTGCATATCTTGCTTGCTTCTGTTACTTGCTGCTGGTGTTTGTTTCCTTTTCCATGGATTCTTGGCTCTTCATTCCAGTTGTAATA
CCACAACATGGAGGAACCATAAACAATTTCATTTCACCTGTTGCTAATCAGGAAGCTAACGTGGATGGATTGGCGAGCAAAACACACATGAAAATCATGC
TCAAGTGGATGAGGGGAAGGCGGATGTTGAAGCTGATCTGCAACCATGTTGGCTCCAACAAGAAGTTCATGCACTGCACTCTACCTGAAGAGCCACAAAC
ACAAAGCGATTCCGCTTCCACTGCACAACCCCCATTGAAGCTCAAGACCCAGAAGAAGAAGCTCACCGGGAAGCACAAAAAGAGTCGCAGCTGA
AA sequence
>Lus10010150 pacid=23154178 polypeptide=Lus10010150 locus=Lus10010150.g ID=Lus10010150.BGIv1.0 annot-version=v1.0
MAWWLTGGGGSAGGAIKSALVRYFSRERAVNVRKISPKVPFPEAFAISESLYNIIKKNGPLTIGNTWNLAQVAYLACFCYLLLVFVSFSMDSWLFIPVVI
PQHGGTINNFISPVANQEANVDGLASKTHMKIMLKWMRGRRMLKLICNHVGSNKKFMHCTLPEEPQTQSDSASTAQPPLKLKTQKKKLTGKHKKSRS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73940 unknown protein Lus10010150
[exp]
0 1
AT5G23740 RPS11-BETA ribosomal protein S11-beta (.1... Lus10005348
[exp]
2.2 0.8823
AT3G07590 Small nuclear ribonucleoprotei... Lus10025186
[exp]
2.4 0.8705
AT3G07590 Small nuclear ribonucleoprotei... Lus10016068
[exp]
6.6 0.8389
AT5G23740 RPS11-BETA ribosomal protein S11-beta (.1... Lus10041029
[exp]
7.3 0.8658
AT5G02610 Ribosomal L29 family protein ... Lus10025292
[exp]
10.7 0.8264
AT2G03530 ATUPS2, UPS2 ARABIDOPSIS THALIANA UREIDE PE... Lus10036911
[exp]
11.4 0.8377
AT1G47740 PPPDE putative thiol peptidase... Lus10032708
[exp]
12.5 0.8056
AT1G73940 unknown protein Lus10017355
[exp]
16.6 0.8117
AT1G16790 ribosomal protein-related (.1) Lus10034801
[exp]
17.7 0.7861
AT4G39200 Ribosomal protein S25 family p... Lus10035060
[exp]
17.7 0.8137

Lus10010150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.