Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33230 462 / 1e-163 TMPIT-like protein (.1) AT4G10430 454 / 3e-160 TMPIT-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017356 [exp] 657 / 0 AT4G10430 429 / 4e-151 TMPIT-like protein (.1.2.3) Lus10008294 [exp] 502 / 5e-179 AT4G10430 464 / 2e-164 TMPIT-like protein (.1.2.3) Lus10033263 [exp] 415 / 1e-144 AT4G10430 380 / 2e-131 TMPIT-like protein (.1.2.3) Lus10033261 [exp] 332 / 2e-113 AT1G33230 327 / 3e-112 TMPIT-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147500 [exp] 509 / 0 AT1G33230 486 / 4e-173 TMPIT-like protein (.1) Potri.001G454400 [exp] 494 / 4e-176 AT1G33230 526 / 0.0 TMPIT-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07851 [flax] [poplar] TMPIT TMPIT-like protein
Representative CDS sequence Show only first row Show all	>Lus10010151 pacid=23154173 polypeptide=Lus10010151 locus=Lus10010151.g ID=Lus10010151.BGIv1.0 annot-version=v1.0 ATGGACGGTGGTGCTAATTCGACGGCGGACGAGTCTTCCAGCAAGGTCGAAGAGGAGATTGGAAGAGTAGCTGAAGAGGCGAGGTTGCTGCAGGAATCGG CTGCCTCTCACATCTCCAAGTCATTCAACGACGAGCAATCGCTTCGCCACCGCGCTAATTCTCTCGACTCTTCCATCCGCCGCTGCCGCTCTCTCCTCCG ATCCCTCCTCTCTCGCCGCCAAATCGACAACAAGCTGGCCGACAAGGCAAATTCGCTTCCCCAATCCTCTTTTAACGAGCTGCAGAGAGCTAAGTGTGTG ATTTCCGATGGGGACGCCGCCGCTTTTCTTCCTTCTACTGCCCAAGTACTGCATGTGAAGCATACTCACCTACTTAGTTCAATGGCTGCAGGTGGCTTTC TCAGGATGTTTCTAGGCCCCATTAACGTGCGTGCCTCTCGTAAGGACGTCCAACTGAAAGTTAAAGAAGAGTATAACAGTTACAGGGATAGAACTGCCCT TCTGTTTCTTATTTTTCCATCAGCTCTACTAGTTCTAAGGTCCTGGTTGTGGAGTGGATGCTTGCCAGCATTCCCAGTTCAGCTGTATCAAGCGTGGTTG TTGTTCCTTTACACCGGGCTGGCCTTGCGAGAAAACATACTGAGGGTTAATGGGAGCGATATTCGTCCATGGTGGATATACCATCACTACTGTGCTATGA TTATGGCTCTAGTAAGTCTTACGTGGGAAATTAAAGGACAACCCAACTGTGCACAGAAACAGAGAGGAGTCCAACTTTTCTTGCAATGGGCTATGATGCA AGGAGTCGCAATGCTTTTACAGAATAGATATCAGCGTCAGAGACTTTATACCCGAATCGCATTGGGGAAGGCCAAGAGAATGGATGTTGTCTGGGGAGAA ACTGCCGGCGTGGATGGCCAATTGTTGTTACTGTGCCCTATTCTCTTTATTTTGCAGGGTTTCGAGGCATACGTCGGACTGCAGTTGCTGAGGACTGCAT TTGTGAGGGTCGTGACCGAATGGCAGGTAATATTCTGCGGAGTCATTCTGATCTTCATGGCTGTTGGGAACTTCTCAAACACGGTGCAGACACTAATGGC GAAGTCGAGGTTCAAAGCGAAGATGAAACGGAGCAAGAGTAAGGCGGAGCTCGATTAA
AA sequence Show only first row Show all	>Lus10010151 pacid=23154173 polypeptide=Lus10010151 locus=Lus10010151.g ID=Lus10010151.BGIv1.0 annot-version=v1.0 MDGGANSTADESSSKVEEEIGRVAEEARLLQESAASHISKSFNDEQSLRHRANSLDSSIRRCRSLLRSLLSRRQIDNKLADKANSLPQSSFNELQRAKCV ISDGDAAAFLPSTAQVLHVKHTHLLSSMAAGGFLRMFLGPINVRASRKDVQLKVKEEYNSYRDRTALLFLIFPSALLVLRSWLWSGCLPAFPVQLYQAWL LFLYTGLALRENILRVNGSDIRPWWIYHHYCAMIMALVSLTWEIKGQPNCAQKQRGVQLFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGE TAGVDGQLLLLCPILFILQGFEAYVGLQLLRTAFVRVVTEWQVIFCGVILIFMAVGNFSNTVQTLMAKSRFKAKMKRSKSKAELD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10010151 [exp]	0	1
AT4G14740			Plant protein of unknown funct...		Lus10041187 [exp]	6.6	0.9110
AT5G20120			unknown protein		Lus10019426 [exp]	9.2	0.8705
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	9.9	0.9095
AT1G47410			unknown protein		Lus10006481 [exp]	12.0	0.8925
AT2G38820			Protein of unknown function (D...		Lus10018754 [exp]	15.8	0.9001
AT2G19580		TET2	tetraspanin2 (.1)		Lus10008563 [exp]	20.6	0.8945
AT5G39785			Protein of unknown function (D...		Lus10036751 [exp]	21.0	0.8868
AT3G59690		IQD13	IQ-domain 13 (.1)		Lus10027059 [exp]	21.2	0.9087
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10022399 [exp]	25.7	0.9077
AT1G21830			unknown protein		Lus10018177 [exp]	26.8	0.8758

Compare expression of checked genes

Lus10010151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.