Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33170 952 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 936 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 754 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 741 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 712 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 688 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 605 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 509 / 1e-174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 509 / 2e-174 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 468 / 2e-158 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017357 [exp] 1266 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 1058 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 762 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 704 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030479 [exp] 704 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003014 [exp] 703 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012830 [exp] 703 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 702 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 699 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147600 [exp] 1019 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 1013 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 785 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 778 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 776 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 759 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 729 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 727 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G094100 [exp] 717 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.008G147800 [exp] 709 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010152 pacid=23154225 polypeptide=Lus10010152 locus=Lus10010152.g ID=Lus10010152.BGIv1.0 annot-version=v1.0 ATGGTGGGATCGCCAAAGGCACACCAGCTAGAATCAAAGAGAAAGCGCTTAACTTGGATTCTATGCGTTACTGGCCTCTGCATACTATCCTACATTCTGG GATCATGGCAGCACACAACGACTATCCCACCATCCGATCTCTCGAAAGCCAACTGTAGCCCTTCAGCTCCGAACAACGATGGTAAAAATAATCCATCGAC GTTAACATCAACCGTCGACTTGGATTTCGAAAGCCACCACCAGATCGAGATCAACAATTCGGGGGAGAAAAAGGACGACTTCCCGCCGTGTGACATGTCC TACAGCGAGTACACACCGTGCCAGTACCCTCCGAGGGGGAGGCGGTTCGATAGAGACATGTTGAAGTACAGGGAGAGGCATTGCCCGGCGAAGAAGAAGG AGCTGTTGTTCTGCTTGATACCGGCTCCTCCGAATTACAAGACCCCGTTCAAGTGGCCGCAAAGCCGGGACTATGCTTGGTATGATAATATTCCGCACAA GGAGCTTAGCATTGAGAAGGCGATACAGAACTGGATCCAGGTCGAGGGCGAGAGGTTCAAGTTCCCCGGTGGCGGGACCATGTTCCCCCGCGGCGCGGAT GCTTATATTGACGACATTAACGAGCTCGTCCCGCTTAGCGGGGGAGCCATCAGGACCGCTGTCGACACTGGATGCGGTGTTGCGAGTTGGGGTGCGTACC TACTAAAGAGGGACATCATAGCGATGTCGTTCGCGCCACGAGACACCCACGAAGCACAAGTCCAGTTCGCGCTCGAAAGAGGAGTTCCAGCCATGATCGG CGTCATGGGATCTCAGAGGCTTCCTTACCCCGCGAGAGCTTTCGACATGGCTCACTGCTCCCGCTGCTTGATACCCTGGTTCAAATACGATGGGATGTAT CTGATTGAAGTGGACAGAGTGCTGAGGCCAGGAGGCTACTGGATTCTGTCAGGACCACCGATCAACTGGAAGAGGTACTGGAAAGGCTGGGAGAGGAGCA AACAGGATTTGAAACAAGAACAGGATTCGATCGAGGATGTTGCGAAAAGGCTGTGTTGGAAGAAAGTTGCTGAGAAGAATGATCTGTCGATTTGGCAGAA GCCATTGAACCACTTTGATTGTCTGGAGGATCGGAAGCTATACCAGAGGACTCCTCATATGTGCAAGTCTGACAATCCTGATGCAGGCTGGTACAAGAAC ATGGAGACGTGCATAACCCCACTACCAGAAGTAACAACCCCAGACGAAGTCGCCGGCGGCGCCTTAGAAAACTGGCCAGCACGTGCATTCACAATCCCGC CCCGAATCTCCACCAATTCAATCCCAGGAATCACAATCGAGAAATTCAAAGAAGACAACGAGCTATGGGAACAGAGATTAAACCACTACAAGCAAATCAT CAGCCCACTATCCCAAGGCCGATACCGCAACGTAATGGACATGAACGCTTACCTCGGCGGATTCGCAGCGGCTTTAATCAACTACCCGGTCTGGGTAATG AACGTGGTTCCGGTCGACTCCAACCACGACACTCTGGGAGCGATCTACGAGCGTGGGTTCATCGGAAGTTATCAAAATTGGTGCGAAGCGTTCTCGACGT ATCCGAGGACGTACGATTTTATCCACGCCGGCGGGGTTTTCAGCATTTATCAGGATCGGTGCGACGTCGTTTTGATTCTGCTGGAGATGGATCGGATTCT GCGGCCGGAAGGGACGGTGGTGTTTAGGGATACGGTGGATGTTTTGGTGAAGGTTGAGAAGGTGATTAGTCGGATGAGGTGGAAGAGCCGGATCGTTGAC CATGAGAGTGGACCGTTTAATCCGGAGAAGATTCTGGTTGCTACTAAGGAGTATTGGACTGCTGACGGTGGTGGTGGTGATTCTCCGACGAAGCAACGTT AG
AA sequence Show only first row Show all	>Lus10010152 pacid=23154225 polypeptide=Lus10010152 locus=Lus10010152.g ID=Lus10010152.BGIv1.0 annot-version=v1.0 MVGSPKAHQLESKRKRLTWILCVTGLCILSYILGSWQHTTTIPPSDLSKANCSPSAPNNDGKNNPSTLTSTVDLDFESHHQIEINNSGEKKDDFPPCDMS YSEYTPCQYPPRGRRFDRDMLKYRERHCPAKKKELLFCLIPAPPNYKTPFKWPQSRDYAWYDNIPHKELSIEKAIQNWIQVEGERFKFPGGGTMFPRGAD AYIDDINELVPLSGGAIRTAVDTGCGVASWGAYLLKRDIIAMSFAPRDTHEAQVQFALERGVPAMIGVMGSQRLPYPARAFDMAHCSRCLIPWFKYDGMY LIEVDRVLRPGGYWILSGPPINWKRYWKGWERSKQDLKQEQDSIEDVAKRLCWKKVAEKNDLSIWQKPLNHFDCLEDRKLYQRTPHMCKSDNPDAGWYKN METCITPLPEVTTPDEVAGGALENWPARAFTIPPRISTNSIPGITIEKFKEDNELWEQRLNHYKQIISPLSQGRYRNVMDMNAYLGGFAAALINYPVWVM NVVPVDSNHDTLGAIYERGFIGSYQNWCEAFSTYPRTYDFIHAGGVFSIYQDRCDVVLILLEMDRILRPEGTVVFRDTVDVLVKVEKVISRMRWKSRIVD HESGPFNPEKILVATKEYWTADGGGGDSPTKQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10010152 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	3.0	0.8603
AT1G06475			unknown protein		Lus10007328 [exp]	3.7	0.8244
AT5G63180			Pectin lyase-like superfamily ...		Lus10013667 [exp]	6.3	0.8300
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10029616 [exp]	7.5	0.8345
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10030400 [exp]	7.7	0.8495
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10033152 [exp]	8.5	0.8243
AT5G20480		EFR	EF-TU receptor (.1)		Lus10024681 [exp]	12.2	0.7914
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10037164 [exp]	12.4	0.8076
AT5G47530			Auxin-responsive family protei...		Lus10001734 [exp]	13.0	0.7750
AT5G63180			Pectin lyase-like superfamily ...		Lus10013668 [exp]	14.9	0.8124

Compare expression of checked genes

Lus10010152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.