Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10380 407 / 9e-144 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT1G80760 303 / 4e-103 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT5G37820 186 / 2e-57 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT5G37810 175 / 4e-53 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT4G18910 174 / 1e-52 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT4G19030 173 / 3e-52 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT1G31885 168 / 7e-50 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT2G34390 150 / 2e-43 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT3G06100 141 / 5e-40 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT3G16240 99 / 4e-24 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017358 [exp] 499 / 4e-180 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10033268 [exp] 430 / 5e-153 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10024066 [exp] 292 / 9e-99 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10041674 [exp] 227 / 8e-75 AT1G80760 283 / 5e-97 NOD26-like intrinsic protein 6;1 (.1) Lus10029274 [exp] 178 / 2e-54 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10041675 [exp] 176 / 2e-54 AT1G80760 247 / 9e-83 NOD26-like intrinsic protein 6;1 (.1) Lus10035999 [exp] 171 / 1e-51 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10020929 [exp] 155 / 3e-45 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10041222 [exp] 153 / 2e-44 AT3G06100 275 / 3e-92 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455000 [exp] 413 / 3e-146 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G146900 [exp] 412 / 4e-146 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.003G180900 [exp] 305 / 7e-104 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G046800 [exp] 300 / 8e-102 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.011G072100 [exp] 178 / 3e-54 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 174 / 3e-53 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.004G063000 [exp] 174 / 1e-52 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.017G128200 [exp] 169 / 4e-51 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.017G083300 [exp] 165 / 2e-49 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.008G203300 [exp] 152 / 3e-44 AT3G06100 261 / 1e-86 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10010153 pacid=23154172 polypeptide=Lus10010153 locus=Lus10010153.g ID=Lus10010153.BGIv1.0 annot-version=v1.0 ATGCCGGAATCTGAAGGAGGAGGGACGCCGGTGGCGTCGGCTCCGGCGACTCCTGGGACGCCAGGGGGTCCTCTGTTTTCGGGGCAGAGGGTTGACTCAC TATCGTATGAGAGGAAGTCGATGCCGAGGTGTAAGTGCTTTCCGGTGACTATACCGGATGACGTCGACACTCCGACGTGCTTCACTCATTTCCCGACTCC GTCGGCGTCCGATATCTCTCTGACACGCAAGGTAGGAGCAGAGTTCGTGGGAACATTCATACTAATCTTCGCGGCAACAGCGGGGCCCATCGTCAACCAA AAATACAACGGCGCCGAGACCCTGATCGGAAACGCCGCATGCTCCGGCTTAGCCGTGATGATCATCATACTGTCGACGGGACACATCTCCGGCGCCCATC TCAACCCTGCTCTCACCATCGCATTCGCATTCCTCCGTCACTTCCCTTGGGTTCACGTCCCGGCCTACATTCTCGCCCAAGTGTCCGCATCCATCTGCGC CTCCTTCGCTCTCAAAGGTGTGTTTCATCCCTTCATGTCCGGCGGAGTCACCGTTCCTTCCGTCAGCACCGGCCAGGCTTTCGCGCTCGAGTTCATCATC ACTTTCGTTCTCTTGTTCGTCGTCACCGCCGTGGCTACAGATACTCGTGCGGTCGGAGAGTTGGCTGGAATCGCAGTTGGAGCCACCGTCATGCTCAACA TTCTTGTTGCAGGACCATCAACTGGTGCATCGATGAATCCAGTGAGGGCGCTAGGACCAGCAGTGGCAGCAGAGAATTACAGGAAGATCTGGATATACAT GATTGCACCACCTCTCGGTGCTGTCGCTGGAGCAGCCACCTACACGGCTGTCAAACTTCGCGACACTGATGCTGATCCTCCTCGTCCGGTTAGGAGCTTC CGTCGCTAG
AA sequence Show only first row Show all	>Lus10010153 pacid=23154172 polypeptide=Lus10010153 locus=Lus10010153.g ID=Lus10010153.BGIv1.0 annot-version=v1.0 MPESEGGGTPVASAPATPGTPGGPLFSGQRVDSLSYERKSMPRCKCFPVTIPDDVDTPTCFTHFPTPSASDISLTRKVGAEFVGTFILIFAATAGPIVNQ KYNGAETLIGNAACSGLAVMIIILSTGHISGAHLNPALTIAFAFLRHFPWVHVPAYILAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFII TFVLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSTGASMNPVRALGPAVAAENYRKIWIYMIAPPLGAVAGAATYTAVKLRDTDADPPRPVRSF RR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	5.9	0.9577
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10028273 [exp]	6.0	0.9446
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	6.2	0.9545
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	6.9	0.9566
AT3G53400			unknown protein		Lus10026502 [exp]	7.5	0.9538
AT5G49350			Glycine-rich protein family (....		Lus10016857 [exp]	9.2	0.9348
AT2G29150			NAD(P)-binding Rossmann-fold s...		Lus10010877 [exp]	9.4	0.9492
AT2G16750			Protein kinase protein with ad...		Lus10014122 [exp]	11.3	0.9426
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	14.1	0.9508
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	15.7	0.9532

Compare expression of checked genes

Lus10010153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.