Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19990 580 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017359 [exp] 762 / 0 AT3G19990 592 / 0.0 unknown protein Lus10038848 [exp] 631 / 0 AT3G19990 536 / 0.0 unknown protein Lus10028680 [exp] 132 / 1e-35 AT3G19990 144 / 1e-40 unknown protein Lus10028681 [exp] 115 / 8e-31 AT3G19990 110 / 4e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G001200 [exp] 601 / 0 AT3G19990 632 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010154 pacid=23154210 polypeptide=Lus10010154 locus=Lus10010154.g ID=Lus10010154.BGIv1.0 annot-version=v1.0 ATGCCACCGATCAATAGCAGCAACAACAGCAATTCAACTACCACCGCAACCAGCGACGTCGTAGGCGTCCACACAGATGACCTCCAGTCGATCTTATCCG CCGCTCGCCCTTTTCTGCGCGGCGAACTCGAATCCGCCGACGAAAAACTCCCCCGACTGATTGCAGTCCTGCGATCAGTCGGCGCAGGGGAGTGCTGGCA CAAGCACGGCAGCTTCTTGGACCACCTAATCGACATTTACCGCATCCTCAAGCTATGGGGAGCTCCCGATTCCGTCTGCCTCTGCGGCCTCTTCCACTCC GCCTACTCCAACTCTTACGTCAACCTCGCGATCTTCGACCCTTCCACTGGCCGCGACGTCGTCCGCGGCCACGTAGGCGACGCCGCCGAGAGGCTGATCC ATCTGTTCTGCATCGTGCCCCGCCAGTCTCTGATCCACGACGACCTACTCTTCAATTACCCCGACGACTCCGAACTCCGCCGCCACTTGGCTGATTCCGA GGCTTCGTTGATGAACGCGAAGGAGAGAGGGGAATTCGATTCGGGGGAAGCGTGGAGGATGAAGTTGAATTCGTTACTGCCGGTTGTTGGAGTTAGAGTT AAGCATATTAGGACTGGAGAAGAGGTGGAGGTGTCTAGAAGAGTGGTGGCTACTTTCCTTTTGATGACCATGGCGGATTTCAGCGATCAATTGTTCGGAT TCCAGGACGAGCTGTTCGAAAATTCGAACGGGAGATTGGATTTCTTGCGGAACAAGTTTACTTCTCTTTGGCCAGGGGACGGTAAGCCAGGGCTGTGGAT CAACTCCATTTCAAGGATGGGAGCTGTGTACACACTAATTGTAAGAGAGGAGGAGATAATTAGGGCACAGAATGGCCGAATTGGAGCGGAGGATGAAGAA CTGGATCTGGTGATGCCACCGGTGCTAGATAAATGCACGAGGATTGTGGATTCGGAGGAGCAGATTGAAGCGAGGGGGCTTTACTGGGAGGCGGTTTGCG GGAAGGGAACGGAGGAGGCGGCGGAGGAGATGTTGGTGAAGAGTATTGAGAAGAATCGGTTCGTCGGGGAGCCGCATTTGGTGGTGGCGCAGTTGTATTT GGGGCAGGGGAGGTTCGAGGAAGCGGGAAGGGAAGCGGAGACCGGGCTGAGGCTGAGGCTGATGCTGGAGTGGGGGAGTCCGTGGGACAAGAGGACTTCT TGGGAGGGGTGGGTTGCTTGGGCAAGGGTTTTGGTTATGAAGGCTAAAGAGAAGTCTTGGCCTAACACTTCTTGGGGCATCCTTAATTTGGGGCTTGTTA GGTGA
AA sequence Show only first row Show all	>Lus10010154 pacid=23154210 polypeptide=Lus10010154 locus=Lus10010154.g ID=Lus10010154.BGIv1.0 annot-version=v1.0 MPPINSSNNSNSTTTATSDVVGVHTDDLQSILSAARPFLRGELESADEKLPRLIAVLRSVGAGECWHKHGSFLDHLIDIYRILKLWGAPDSVCLCGLFHS AYSNSYVNLAIFDPSTGRDVVRGHVGDAAERLIHLFCIVPRQSLIHDDLLFNYPDDSELRRHLADSEASLMNAKERGEFDSGEAWRMKLNSLLPVVGVRV KHIRTGEEVEVSRRVVATFLLMTMADFSDQLFGFQDELFENSNGRLDFLRNKFTSLWPGDGKPGLWINSISRMGAVYTLIVREEEIIRAQNGRIGAEDEE LDLVMPPVLDKCTRIVDSEEQIEARGLYWEAVCGKGTEEAAEEMLVKSIEKNRFVGEPHLVVAQLYLGQGRFEEAGREAETGLRLRLMLEWGSPWDKRTS WEGWVAWARVLVMKAKEKSWPNTSWGILNLGLVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19990			unknown protein		Lus10010154 [exp]	0	1
AT3G26100			Regulator of chromosome conden...		Lus10036945 [exp]	10.3	0.9397
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10040861 [exp]	11.0	0.9058
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	14.6	0.9374
AT2G32150			Haloacid dehalogenase-like hyd...		Lus10004914 [exp]	16.6	0.9291
AT3G56310			Melibiase family protein (.1.2...		Lus10034218 [exp]	19.3	0.9360
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	20.6	0.9332
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	21.4	0.9324
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	24.8	0.9273
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	25.9	0.9333
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10002827 [exp]	26.5	0.9307

Compare expression of checked genes

Lus10010154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.