Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50370 617 / 0 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT3G19980 616 / 0 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT4G26720 408 / 2e-144 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 401 / 1e-141 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT1G69960 373 / 3e-130 PP2A serine/threonine protein phosphatase 2A (.1) AT1G10430 371 / 8e-130 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 369 / 1e-128 PP2A-1 protein phosphatase 2A-2 (.1.2) AT3G58500 367 / 5e-128 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT2G42500 367 / 9e-128 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT2G29400 275 / 9e-92 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017361 [exp] 633 / 0 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10013456 [exp] 622 / 0 AT3G19980 623 / 0.0 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) Lus10041015 [exp] 571 / 0 AT1G50370 570 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10016576 [exp] 407 / 2e-142 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10030810 [exp] 372 / 9e-130 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 372 / 9e-130 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 370 / 4e-129 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10042160 [exp] 372 / 5e-129 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10039185 [exp] 363 / 2e-126 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G003200 [exp] 627 / 0 AT1G50370 624 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.010G254500 [exp] 620 / 0 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.011G092200 [exp] 396 / 1e-139 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 396 / 2e-139 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.015G068300 [exp] 373 / 2e-130 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 371 / 2e-129 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.003G217900 [exp] 366 / 2e-127 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.008G191600 [exp] 365 / 2e-127 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.001G007800 [exp] 365 / 3e-127 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.010G039700 [exp] 363 / 1e-126 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10010156 pacid=23154188 polypeptide=Lus10010156 locus=Lus10010156.g ID=Lus10010156.BGIv1.0 annot-version=v1.0 ATGGATTTGGATCAGTGGATTGCAAAGGTGAAGGAAGGGCAGCATCTCCTGGAAGACGAGCTCCAGCTCCTGTGCGAATATGTAAAAGAGATCCTAATCG AGGAATCCAATGTCCAGCCTGTTAACAGTCCTGTGACTGTTTGTGGAGATATACATGGTCAGTTTCATGATCTAATGAAACTTTTCCAGACCGGAGGTCA TGTTCCAGAGACTAATTATATATTTATGGGGGACTTTGTGGACCGAGGTTATAATAGTCTTGAAGTTTTCTCTATACTTTTACTTCTTAAAGCGAGGTAT CCAGCTCATATTACGCTTTTGCGTGGGAATCATGAGAGCCGTCAGCTAACTCAGGTTTATGGTTTCTATGACGAGTGCCAACGGAAGTATGGGAATACCA ATGCATGGCGCTACTGTACAGATGTTTTCGATTATCTAACGCTTTCAGCTATTATAGATGGCACTGTGCTTTGTGTTCACGGTGGTCTTTCTCCTGATGT TCGAACAATTGATCAGATAAGAGTAATTGATCGGAACTGTGAAATTCCTCATGAAGGACCATTCTGTGATCTTATGTGGAGTGATCCGGAAGAGATAGAG ACATGGGCGGTTAGCCCCAGAGGAGCAGGTTGGCTTTTTGGATCAAGGGTCACTTCTGAGTTTAACCACATTAACAACCTCGACCTGGTTTGTCGGGCGC ACCAACTTGTACAAGAAGGCCTCAAGTACATGTTTCAAGATAAAGGTTTAGTAACTGTGTGGTCTGCACCGAACTACTGTTACCGATGTGGTAATGTGGC TTCTATCCTAAGCTTCAATGAGAATATGGAGAGAGAAGTGAAGTTCTTCACCGAAACGGAGGAGAACAATCAGATGAGAGGACCAAGGACTGGAGTTCCT TATTTCTTATGA
AA sequence Show only first row Show all	>Lus10010156 pacid=23154188 polypeptide=Lus10010156 locus=Lus10010156.g ID=Lus10010156.BGIv1.0 annot-version=v1.0 MDLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFSILLLLKARY PAHITLLRGNHESRQLTQVYGFYDECQRKYGNTNAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDVRTIDQIRVIDRNCEIPHEGPFCDLMWSDPEEIE TWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVP YFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10010156 [exp]	0	1
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10015627 [exp]	3.2	0.8392
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10018862 [exp]	4.5	0.7541
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	5.3	0.8376
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030581 [exp]	7.3	0.7757
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	7.7	0.7954
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10041465 [exp]	10.2	0.7933
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	12.6	0.7980
AT4G32910			unknown protein		Lus10011625 [exp]	12.8	0.8004
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	19.0	0.7108
AT1G16570			UDP-Glycosyltransferase superf...		Lus10014357 [exp]	22.2	0.7550

Compare expression of checked genes

Lus10010156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.